barSeed - Barley Seed Development Database

Probe CUST_11622_PI390587928

Source Contig U35_31703

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11622_PI390587928	Hv_44K_v2	TCACGCAGGAGATCCCGTCGCTTTGCAAGTCCACCTTGGAGACTTGCCTTGGCCCCTTCC	273	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360857	1669	2e-24	288 - 347	100	60 / 60	plus	ABC09397 ABC14823 ABC30335 ABC39299 ABC39577
MLOC	MLOC_2849.1	1775	7e-23	1292 - 1351	98	59 / 60	minus	ABC09397 ABC14823 ABC30335 ABC39299 ABC39577
JLOC1	JLOC1_1702.2	1816	4e-23	394 - 453	98	59 / 60	plus
JLOC1	JLOC1_1702.1	1776	4e-23	393 - 452	98	59 / 60	plus
Harvest21	ABC14823	1698	1e-23	306 - 365	98	59 / 60	plus	ABC14823
Harvest35	U35_31703	392	3e-25	274 - 333	100	60 / 60	plus
Harvest35	U35_6601	1698	1e-23	306 - 365	98	59 / 60	plus

Contig Sequence (392 bp)

>U35_31703 392 Hv_44K_v2
AAACCTGCAGAAATCCAATGGAAGGAGCAGGCGAGGAGAAGCCACACGCCGTGTGCCTGC
CGTTCCCGGCGCAGGGGCACATCACCCCGATGCTCAGCGTGGCCAACCTGCTCCACGCCC
ACGGCTTCCACGTGACCTTCGTCAACTCCGAGTACAACCACGCCCGCCTTGTCCGCACAC
GCGGCGCCGCCGCGCTGGCCGGCTCGCCGGGCTTTCGCTTCGCCACCATCCCCGATGGCC
TGCCGCAGCCGTCCGGCGACGTGGATGACGATGTCACGCAGGAGATCCCGTCGCTTTGCA
AGTCCACCTTGGAGACTTGCCTTGGCCCCTTCCGCTGCCTCCTCGCCGAGCTCAATGTCG
CGGNCTTCACAGGAGGCCATCCGCCTGTGACT

Homology of Contig U35_31703 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51930.1	486	6e-55	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi3g58670.1	493	8e-55
Arabidopsis v10	None