barSeed - Barley Seed Development Database

Probe CUST_11606_PI390587928

Source Contig U35_31711

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11606_PI390587928	Hv_44K_v2	ATACAAGTACCTCGCGGCATTCACGGTGATCTTCGCCGTGGTCATCTTCCTCTTCCTGGG	388	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39134.1	2597	2e-24	2134 - 2193	100	60 / 60	minus	ABC00078 ABC00225 ABC00385 ABC00555 ABC00840
JLOC1	JLOC1_25500.1	879	8e-25	33 - 92	100	60 / 60	plus
Harvest35	U35_31711	529	3e-25	389 - 448	100	60 / 60	plus

Contig Sequence (529 bp)

>U35_31711 529 Hv_44K_v2
ACCCGACTACTTGCCATATTTCAAACCCCCTCTCTCTTTCCGTGTCTTGCTTTTCCCGCT
GGTTCCCGGGGGCGCGCGCGATGGGCTTCTCCGCGGCCGACGCGGTCATACCGGCGTGCG
CCGTGATCGGCATTGCCTTCGCGCTCTGGCAATGGTTCCTTGTCGCCNAGGTGAAGGTGT
CCGCCTACGCGCCGGCGGGCAACGGCGTACACGGCCGGCCAGTGTTCCGGACGGAGGACG
AGGACGGTGAGGATGCCCGTATGGGCGGTGGCGGCGGCGGCGAGAGCGACGACNAGGAGG
ACGGAGGCGACGGCCCGGCGGCCGTGGCCAGGTGCGCCGAGATCCAGAACGCCATCTCAG
TCGGAGCANACTCGTTCCTTTTCACCCAATACAAGTACCTCGCGGCATTCACGGTGATCT
TCGCCGTGGTCATCTTCCTCTTCCTGGGGTCCGTGCACCGGTTCAGCACAGCCAGCCAGC
CGTGCCAGTACACCAAGGGCAAGACGTGCAAGCCGGCGCTGGCCAACGC

Homology of Contig U35_31711 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g12540.1	776	3e-61
Arabidopsis v10	None