barSeed - Barley Seed Development Database

Probe CUST_11605_PI390587928

Source Contig U35_31712

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11605_PI390587928	Hv_44K_v2	AAATACCTGAGAAGCCGGTGACTTTTGCTGAGGGAGCTTCTTACAGTGTTGTAATACTCG	404	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372094	1360	2e-23	436 - 493	100	58 / 58	plus	ABC08321 ABC08322
MLOC	MLOC_75731.1	422	2e-23	312 - 369	100	58 / 58	minus	ABC08321
JLOC1	JLOC1_50513.1	188	1e-23	73 - 130	100	58 / 58	minus
Harvest21	ABC08321	1092	4e-24	391 - 448	100	58 / 58	plus	ABC08321
Harvest35	U35_31712	517	3e-25	405 - 464	100	60 / 60	plus
Harvest35	U35_17998	1092	4e-24	391 - 448	100	58 / 58	plus

Contig Sequence (517 bp)

>U35_31712 517 Hv_44K_v2
AACATTCCCCCCATCTCGCCTGTTCTTCTTCCCCTCTTCCCCTCCTCCNAGCAAACGCGA
AGGATCAATGGCCGCTCGGATCACGAGGCTGCTCCACCACCACAACCGCCGCCTACTCGC
CACCGCGGCGGAGGCCTCCGCTCGTCGCCGGCCGCGCGCTCCCCTTGGCGGCGCCCTCTA
CNAGCAGGATGTTGCANAGGCTGAAGCATCCTCTTTAAAAAATTCAAGGTGGTACATGAC
CAAGTCAAGCCCTTCTAGTCCTCTCACAATGCANGAGTACCGCGAAACATTTCCTTCGTT
AATAAGGTCATCTGCATCTTACTCCTCACAAGCTTCAGACAAAAATCCCAAGGAGAANAA
AGACTTGTCAACTGTTGAAGATCCCTTCAGTGCCCCTACATATNAAATACCTGAGAAGCC
GGTGACTTTTGCTGAGGGAGCTTCTTACAGTGTTGTAATACTCGCGGGGCTTGGAGTTGC
AGCATTAGCTGGATATGCTGTTTTCAAGGAGCTTATC

Homology of Contig U35_31712 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None