barSeed - Barley Seed Development Database

Probe CUST_11581_PI390587928

Source Contig U35_29407

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11581_PI390587928	Hv_44K_v2	ATCGAGACCATCTGCCTGCTGATGGCGTACAAGATCAAGTTCCCGGACAACTTCTTCCTG	466	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372991	1405	2e-24	477 - 536	100	60 / 60	plus	ABC01227
JLOC1	JLOC1_5034.2	1046	8e-25	111 - 170	100	60 / 60	plus
JLOC1	JLOC1_5034.1	1040	8e-25	111 - 170	100	60 / 60	plus
Harvest21	ABC28678	526	3e-25	467 - 526	100	60 / 60	plus
Harvest35	U35_29407	526	3e-25	467 - 526	100	60 / 60	plus

Contig Sequence (526 bp)

>U35_29407 526 Hv_44K_v2
CCAATGCCAATGCCATGCAATGGACACGGGCGCACGGACGCTCTCCTCCTCTCCTCCTGT
CCCCAGTAATTAACCCCGGCAACCTGACGCTGACGCTGACGCCGCCGCCGCCGCCGCGAG
CGGCAAGGAGAGAGAGAGAGAGAGATTAATATAATTGATCGATCAGGATGATGGACGGGC
ACGCGGTGGACGAGCTGATCCGGCGGCTCCTGGACGGGAAGAAGGGCAAGGCGCCTCCGA
GCAAGAAGGTGCAGCTGAGCGAGGCGGAGATCCGCCACCTCTGCGTCACCGCCAAGGGGA
TCTTCCTCTCCCAGCCCAACCTCCTGGAGCTCGAGGCCCCCATCAACGTCTGCGGCGACA
TCCATGGGCAGTTCTCGGACCTGCTCCGGCTGTTCACTACGGCGGTCTGCCGCCGTCCGC
CAACTACCTGTTCCTGGGCGACTACGTGGACCGTGGGAAGCAGAGCATCGAGACCATCTG
CCTGCTGATGGCGTACAAGATCAAGTTCCCGGACAACTTCTTCCTG

Homology of Contig U35_29407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g37570.1	306	1e-52
Arabidopsis v10	None