barSeed - Barley Seed Development Database

Probe CUST_11560_PI390587928

Source Contig U35_17439

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11560_PI390587928	Hv_44K_v2	TTTGCTGCTGTTTTGTTGGCATGCAGCAATGGAGATCGCCGAGCGGTTCGCGTACAAGGG	12	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71333.3	2158	2e-24	388 - 447	100	60 / 60	plus	ABC07895 ABC07897 ABC07898
MLOC	MLOC_71333.4	1708	2e-24	1585 - 1644	100	60 / 60	minus	ABC07895 ABC07897 ABC07898
MLOC	MLOC_71333.1	1731	2e-24	1658 - 1717	100	60 / 60	minus	ABC07895 ABC07897 ABC07898
Harvest21	ABC07896	677	3e-25	13 - 72	100	60 / 60	plus
Harvest35	U35_17439	677	3e-25	13 - 72	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_17439 677 Hv_44K_v2
GTGTTTGTTGCTTTTGCTGCTGTTTTGTTGGCATGCAGCAATGGAGATCGCCGAGCGGTT
CGCGTACAAGGGCGTGGCGGCGAACCTCATCACGTACCTCACGGGGCCGCTGGGCCAGCC
GATGGCGCGCGCGGCGGCGTCCATCGACGCGTGGAAGGGCGTCTCCCAGATGCTGCCGCT
GCCGGTGGCCTGCGTCGCCGACGCCTGGCTCGGCCGCTACCGGGCCATCGTCCTCGCCTC
CGTCCTCTTCGTCGTGAGCATGGGCACGCTGTCGCTGTCGTCGGCGTTCCACATCTTCCG
GTCCGGCGGGCACGTGGCCGTCTTCTACGTCGCGCTCTACCTGGTGGCGCTGGGCGAGGG
CGCGCACAAGCCGTGCGCCAGGCGTTCGCGGCGGACCAGTTCGACGAGAGGGACCCCAAG
GAGAACGTGGCGCGGAGCTCCTTCTTCAACTGGTGGTACTTCGGCATGTGCGCCGGCACC
GCCGTCACCACCATGGTCTCCAGCTACGTCCAGGACAACGTCGGCTGGGGCCTCGGCTTC
GGCATCCCCTGCATCGTCATCGTCGCCTCCCTCGCCGTCTTCCTCATTGGCACTCCGTCC
TACCGCTACTACACCACCAAGGAGCCCAGCCCCGTCGCCCGCGTCGGCAAGGCGCTCCTG
GTGCTGATCAAGAGCTG

Homology of Contig U35_17439 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65110.1	549	2e-87	protein\|POT family protein, expressed
Brachypodium v1_2	Bradi2g56360.1	529	2e-92
Arabidopsis v10	None