barSeed - Barley Seed Development Database

Probe CUST_11541_PI390587928

Source Contig U35_17440

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11541_PI390587928	Hv_44K_v2	GATGTATAGCCTGACAATATTGTGCATCCAAGAGAACTCTGAATTACGTGACTGAAAAAA	851	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71333.2	2165	2e-24	67 - 126	100	60 / 60	minus	ABC07895 ABC07897 ABC07898
MLOC	MLOC_71333.1	1731	2e-24	67 - 126	100	60 / 60	minus	ABC07895 ABC07897 ABC07898
MLOC	MLOC_71333.3	2158	3e-21	2105 - 2158	100	54 / 54	plus	ABC07895 ABC07897 ABC07898
JLOC1	JLOC1_47404.1	2099	8e-25	1854 - 1913	100	60 / 60	plus
Harvest21	ABC07897	923	1e-24	854 - 912	100	59 / 59	plus	ABC07897
Harvest35	U35_17440	944	3e-25	852 - 911	100	60 / 60	plus

Contig Sequence (944 bp)

>U35_17440 944 Hv_44K_v2
GGAGGAGCGTCTTCCGCCTGCTGCCAATCTGGGCGTGCTGCATAATCTACGCCATCATCT
TCTCCCAGACGTCCACCTTCTTCACCAAGCAGGCGGCCACGCTGGACCGCCGGATCGGCC
CCAAGTTCAAGGTGCCGCCGGCGGCGCTGCAGACCTTCATCAGCGTCACCATCGTGGCCT
TCATCCCGGTGTACGACCGCCTCTTCGTGCCGCTCGCGCGCCGCTACACGGGGCGCCCCA
CGGGCATCACCATGCTGCAGAGGGTTGGCGCAGGGCTGTCCCTCTCCCTCGTCGCCGTCG
TGCTCTCGGCCCTCGTGGAGATGAGGCGGCTCGGCGTCGCCAGGGACGCCGGCCTGGTGG
ACACCCCCAAGGCGCGGCTCCCGATGACGCTCTGGTGGATGGTGCCGCAGTACGTCCTCA
TCGGCGTCTCCGACGTGTTCGCCATGATCGGGCTGCAGGAGTTCTTCTACGACCAGGTCC
CCGACGCCGTGCGCAGCCTCGGCCTCGCGCTCTTCCTCAGCATCTTCGGCGTGGGCCACC
TCCTCAGCAGCTTCCTCATCTCCGTCATCGACAGGGCCACGGCGAGGCGCGGCGCAAGCT
GGTTCTCAAACAACCTCAACCGCGCGCACCTTGACTACTTCTACTGGCTGCTCGCCGGAC
TCTGCGTCGTCGAGCTGGTCGCATTCTTCTTCTTCTCACGAGCTTATGTCTACAAGAGGA
AGAACGGCGATGGCGAGGGCAATGGCGATTACAGGGGAGGTGATGCGGATGCTACACTCG
TGTAACTAAATTCTGATTGTCATAGAGTGCGAGGTAGAGTGTCATAAATTTTGGGGTTGG
AATTTTCTCCAGATGTATAGCCTGACAATATTGTGCATCCAAGAGAACTCTGAATTACGT
GACTGAAAAAAAGTCTTTTTTTAAGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65110.1	549	3e-128	protein\|POT family protein, expressed
Brachypodium v1_2	Bradi2g56360.1	529	1e-134
Arabidopsis v10	AT1G22540.1	557	1e-95	Major facilitator superfamily protein \| chr1:7964202-7966222 FORWARD LENGTH=557