barSeed - Barley Seed Development Database

Probe CUST_11539_PI390587928

Source Contig U35_17441

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11539_PI390587928	Hv_44K_v2	TATGTTAACATTTGATGCGCATCATACGGTCATTCGCGTCGAACACGTCCGCATAAGCTT	1097	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56891.2	2859	2e-24	2005 - 2064	100	60 / 60	plus	ABC07895 ABC07897 ABC07898
MLOC	MLOC_56891.1	3085	2e-24	2448 - 2507	100	60 / 60	plus	ABC07895 ABC07897 ABC07898
MLOC	MLOC_56891.5	2056	2e-24	1707 - 1766	100	60 / 60	plus	ABC07895 ABC07897 ABC07898
JLOC1	JLOC1_36817.2	2148	8e-25	1847 - 1906	100	60 / 60	plus
Harvest21	ABC07895	1191	3e-25	1098 - 1157	100	60 / 60	plus	ABC07895
Harvest35	U35_17441	1191	3e-25	1098 - 1157	100	60 / 60	plus

Contig Sequence (1191 bp)

>U35_17441 1191 Hv_44K_v2
GCGCTCGCCATCTTCTTGCTCGGCACTCGGCGGTACCGCTACTACACCTCCACCCAGTCC
AGCCCCTTCGCCCGCCTCGCCAGGGCCTTCGTCGCGCTCATCAAAGGCTCCAAATCCAGC
CAGTGCGCCAGCACTCTTGCGGGCGAGGATGCCGAGTTCAACGCGGATCACCGGGAGGAA
GTGAGGGGCCTGCTGCGGCTGTTCCCAATCTGGGCGACGTGCATCATCTACGCCGTCATC
TTCTCCCAGTCGTCCACCTTCTTCACCAAGCAGGCCGCGACGCTGGACCGGCGGATCGGC
GCCACGTTCCGCGTGCCGCCGGCGGCGCTGCAGACGTTCATCAGCCTGACCATCATCACC
TTCATCCCGGTCTACGACCGGCTGTTCGTGCCGGCGGCGCGGCGGTTCACGCGCCTGTCC
TCGGGCATCACCATGCTGCAGAGGATCGGCACCGGGCTGGTCCTGGCGCTGGTGGCCATG
GTGGTGGCGGCGCTGGTGGAGGCGAGGCGGCTGGGCGTGGCGAGGGAGGCCGGGCTGGTG
GACGACCCCAAGGCGGCGCTGCCGATGAGCCTGTGGTGGATGGTGCCGCAGTACGTGCTG
TTCGGGCTGTCGGACGTGTTCGCCATGATCGGGCTGCAGGAGTTCTTCTACGACCAGGTC
CCCGACGCGCTGCGCAGCCTCGGGCTCGCCTTCTTCCTCAGCATCTTCGGGGTGGGCCAC
TTCTTCAGTAGTTTCCTCATATCCGCCATTGACGGCTACACCAAGAAGAGCGGTGCCAGC
TGGTTCTCCAACAACCTCAACCGCGCGCACCTCGACTACTTCTACTGGCTCCTCGCCGGG
CTCTGCGCGGCGGAGCTGGCCGCGTTCGTGGTTGTCTCGCGCGTCTATGTGTACAAGAAG
AGGGTCGCTCACCACGACCATGACCATCACGACGGCGGCGCTGTCATGTAGTAATCACTT
GTAAGGTGTTCATCCTTTTCGCGAATGTACAGATGTATAGCGTTATAGTATAAGAGTTAA
ATTCACTCACGGTACTTGTCCTCTCCGTATAAACTCACTTTGGTCACCGTATTCTGTTAA
CAATAATTTACGGTAATTATGTTAACATTTGATGCGCATCATACGGTCATTCGCGTCGAA
CACGTCCGCATAAGCTTGTTGACCGTTTGTCCGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17441 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65100.3	427	2e-148	protein\|peptide transporter, putative, expressed
Brachypodium v1_2	Bradi2g56347.1	550	1e-156
Arabidopsis v10	AT1G22540.1	557	1e-92	Major facilitator superfamily protein \| chr1:7964202-7966222 FORWARD LENGTH=557