barSeed - Barley Seed Development Database

Probe CUST_11537_PI390587928

Source Contig U35_17442

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11537_PI390587928	Hv_44K_v2	ATAACATTACACACCGGCGCCCCTATCAAGGGAAGAAAATTACAAGTTGGTATCAAAAAA	893	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11789.1	1616	9e-22	70 - 124	100	55 / 55	minus	ABC07895 ABC07897 ABC07898
JLOC1	JLOC1_7852.1	1780	5e-22	1657 - 1711	100	55 / 55	plus
Harvest21	ABC07898	978	3e-25	894 - 953	100	60 / 60	plus	ABC07898
Harvest35	U35_17442	978	3e-25	894 - 953	100	60 / 60	plus

Contig Sequence (978 bp)

>U35_17442 978 Hv_44K_v2
GCCCTCTGCCGATTCGCCGAGTCAAGGCGTCCTCCGTCTGTTCCCGATCTGGGCGACGTG
CCTGATCTACGCCGTGGCCTTCTCCCAGTCGTCCACCTTCTTCACGAAGCAGGCGGCGAC
CCTCGACCGGCACGTGGGCAAGCGGCTCCAGGTGCCACCGGCGGCGCTCCAGAGCTTCAT
CAGCATCACCATCGTAATCTTCATGCCCATCTACGACCGCGCCATCGTGCCGCTGGCGCG
GCGCTGCACCGGCGTCCCCTCCGGCATCACCATGCTGCAGCGCATCGGCGTCGGGATGGT
GCTCTCCCTCGTGTCGATGGTGGTCGCGGCGCTCGTGGAGACGCGCCGGCTCCGAATCGC
GACGGACGCCGGCCTGGCAGACCTGCCCAAGGTGCCGGTGCCGATGAGCCTGTGGTGGAT
GGTGCCGCAGTACGTGCTGTTCGGCGCGGCGGACGTGTTCACCATGGTCGGGCTGCAGGA
GTTCTTCTACGACCAGGTGCCCGACAAGCTGCGCAGCATCGGGCTGGCGCTCTACATCAG
CATCTTCGGCATCGGCAGCTTCATCAGCAGCGGCCTCGTGTCGGGCATCGACAAGTGGAC
GTCGGAGAGGGGGCAGAGCTGGTTCTCCAACAATCTCAACCGCGGCCACCTCGACTACTT
CTACTGGCTCATCGCCGCGCTCAGCGCGCTAGAGCTTCTGGTGTACGTCTTCTTCGCGGT
GACCTTCAGGTACAAGAAGAAGGCAGCAGCAGCTACCGTTGGTTAGGACAACATATATAC
TCGTGCTAGGCTAGGAATAGGATAAATACGAATTCAAGGTGTACATGCTTACATTTCCTT
TTCGATGGCTATTCTCCACTTCAAAATGCTACAGGCCCACACAAATGATTTTGATAACAT
TACACACCGGCGCCCCTATCAAGGGAAGAAAATTACAAGTTGGTATCAAAAAAAAAAAAA
AANAAAACTCGAGACTAG

Homology of Contig U35_17442 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g35650.1	582	2e-109	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi2g24327.1	560	3e-117
Arabidopsis v10	AT1G22540.1	557	1e-80	Major facilitator superfamily protein \| chr1:7964202-7966222 FORWARD LENGTH=557