barSeed - Barley Seed Development Database

Probe CUST_11491_PI390587928

Source Contig U35_26090

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11491_PI390587928	Hv_44K_v2	GTCTACTCCCTTTGTAACTAAATAACTGTAGTTGGAAGAACTAATCTAGTAGTTCTCTTC	717	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72542.1	1987	7e-23	64 - 123	98	59 / 60	minus	ABC18116 ABC23510
JLOC1	JLOC1_48246.1	2038	4e-23	1858 - 1917	98	59 / 60	plus
Harvest21	ABC23510	861	3e-25	718 - 777	100	60 / 60	plus	ABC23510
Harvest35	U35_26090	861	3e-25	718 - 777	100	60 / 60	plus

Contig Sequence (861 bp)

>U35_26090 861 Hv_44K_v2
CCGGGCCGGCGCTGGGCATGACAAGTCCAGCTGGTGCGAGGCGAACGCGGCGGTCGGGGA
CGCACGTATCCAGGCGGCGCTGGACTGGGCGTGCGGCAACGGGGCGGACTGCAGCGCCAT
CCAGCCCGGGAAGCCATGCTACGAGCCCAATACCAAGGTGGCGCACGCCTCCTACGCCTT
CAACGACTACTACCAGCGCAAGGGCCGGGCCAGCGGGACGTGCGACTTCGCCGGCGCCGC
TTCCATCGTCTACCGGCAACCAACAGGCACCTGCGACCCCAAGGCAGGGAGCTGGTGCGT
GGNAACGCGGCGGTCGGGGACGCTCGGCTGCAGGCGGCGCTGGACTGGGCGTGCGGCCAC
GGGGCGGACTGCAGCGCCATCCAGCCCGGCGCGCGGTGCTTTAGTCCTGATACCAAGGCC
GCGCACGCGTCTTACGCATTCAACGACTACTACCAACGCAACGGCCGGTCTGACACCTCA
TGCCATTTCGGCGGAGCCGGCTCTGTTGTTCACCAGGCACCAAACATAGGCAACTGCGTG
CTGCGATCAAGGGCCTGAAGACCTGAACAGACAACTGGTAGCAAAGGCCAAAGCTTAGGC
CATTAGCTTGGAATAATGAACTCAACACTCTGCTACTTCGTATCAAGGGAGCGTAGCCAG
TTTACTGCTGTAAAACTAGGCGAATAAGCCCATGTGCTTTGTGATCCGACGGTCTATGTC
TACTCCCTTTGTAACTAAATAACTGTAGTTGGAAGAACTAATCTAGTAGTTCTCTTCAAC
TATAATTATTTAGATATAAAAAATATATATTACAAGTAATGCTATCGTAATAACTTCGAT
GTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_26090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35520.1	562	7e-71	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g25530.1	549	3e-51
Arabidopsis v10	None