barSeed - Barley Seed Development Database

Probe CUST_11460_PI390587928

Source Contig U35_38092

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11460_PI390587928	Hv_44K_v2	TGTATTTTACGCCCTTCTTTGCAAGTGTCATCAGCTTAGCATCTTGTTGATCATGTGTCA	592	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51964.4	1221	2e-24	425 - 484	100	60 / 60	minus	ABC10594 ABC17375
MLOC	MLOC_51964.3	1704	2e-24	521 - 580	100	60 / 60	minus	ABC10594
MLOC	MLOC_51964.2	2070	2e-24	548 - 607	100	60 / 60	minus	ABC10594
Harvest21	ABC33918	655	3e-25	593 - 652	100	60 / 60	plus
Harvest35	U35_38092	655	3e-25	593 - 652	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_38092 655 Hv_44K_v2
GGCCTGCAGGCTTCGTGTNTACCAATGGTAGCTGGTCGCCCTGTNTATATATCGTCAACG
GGTACTTATCTGTTACTTTGACAGGATTTGCATTGCATAAGGGAAATAAACTCTTTTCTG
CATTTGTTTCCATCTTATAACAACCATACGGGCGAATGTGCTATTGGCACTAAGGTGGCT
CCCTGGTACAAACCATGAGATGCGCCTTTACATAGGATCAGAAGATTAATACATTTTTAT
ATGTTGTTGTAGATCCTATAGTAATTGATGTTTCTTTAGAGAAAATGTTGTGATGACTTT
ATTGCCTTACTGTTGGGACCTCTCGTATTTCTAGAAGTGAATATCAATCTTGTGCTCCTA
ATTTTCCTGCTTCCTTAGGATTACTGTTAATTTTCCAATTGCAGGTGCTAATAACTATTT
CACGTTTTGCTCCCCTGAGTATTTGGCCATGGGGGGGTGGTGGTCACTTTGCACTTTATC
TCGGTGAAGACCTGTAATCTACTAATCTCTATCCCACTCTCCCACCTTGTCACGCATAAT
TTTGTTTCGTTCTGATGTTAATGTGTCAGTATGCCAACTTTCAGTCACAAGCTGTATTTT
ACGCCCTTCTTTGCAAGTGTCATCAGCTTAGCATCTTGTTGATCATGTGTCACAT

Homology of Contig U35_38092 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None