barSeed - Barley Seed Development Database

Probe CUST_112_PI415269222

Source Contig TA45888_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_112_PI415269222	Hv_44K_v2	TCTCGATTCTTTTTGCGGGAATACTACGTTTTAGGGTGGTGTTCTCCGGTGAAGAAAAAA	1215	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.005	2.305	2.488	1.448	0.470	0.353
Raw	286.183	1063.451	961.698	856.509	99.062	82.459

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357589	1944	2e-24	1712 - 1771	100	60 / 60	plus	ABC16001 ABC16221
MLOC	MLOC_65544.2	2927	2e-24	1779 - 1838	100	60 / 60	plus	ABC16001 ABC16221
MLOC	MLOC_65544.1	2099	2e-24	1608 - 1667	100	60 / 60	plus	ABC16001 ABC16221
MLOC	MLOC_65544.3	2363	2e-24	1215 - 1274	100	60 / 60	plus	ABC16001
JLOC1	JLOC1_43133.1	2841	8e-25	1779 - 1838	100	60 / 60	plus
Harvest21	ABC16001	1035	3e-25	847 - 906	100	60 / 60	plus	ABC16001
Harvest35	U35_8737	667	3e-25	173 - 232	100	60 / 60	minus
Harvest35	U35_6119	1724	3e-25	1536 - 1595	100	60 / 60	plus

Contig Sequence (1388 bp)

>TA45888_4513 1388 Hv_44K_v2
CGGCACGAGGCCTCGTGCCCGTCGGGGTCGGCCGCCGGGGCGGGGATGTCGGTGCTCGTC
ACGGGCGCCTCCGGGTTCGTCGGCGCGCACTGCTCCCTCGCGCTGCGCAAGCGTGGGGAC
GGCGTCGTCGGCATCGACAACTTCAACGCCTACTACGACCCCTCGCTCAAGAAGGCACGC
AAGGCGCTGCTGTCCTCCCACGGCGTGTTCGTCGTCGAGGGCGACATCAACGACGGCCGG
CTCCTGGCCAAGCTCTTCGACGTCGTCCCCTTCACCCACGTGCTCCACCTGGCCGCGCAG
GCCGGCGTGCGCTACGCCATGGAGAACCCGGCCTCGTACGTACACTCCAATGTTGCGGGG
CTCGTCACCCTCCTGGAGGCCTGCAAGAACGCCGACCCGCAGCCGGCCATCGTCTGGGCG
TCATCCTCCTCCGTCTACGGCCTCAACGACAAGGTGCCCTTCTCCGAGTCGCACCGCACG
GACCAGCCGGCGTCGCTCTACGCGGCCACGAAGAAGGCCGGCGAGGAGATCACCCACTCG
TACAACCACATCTACGGGCTGTCCATCACCGGCCTGCGCTTCTTCACGGTGTACGGGCCG
TGGGGGCGGCCGGACATGGCCTACTTCTCCTTCACCCGCAACATCCTGCAGGGGAAGCCC
ATCACCGTCTACCGGGGCAAGAATCACGTGGACCTCGCCCGCGACTTCACCTACATCGAC
GACATCGTCAAGGGCTGCCTGGGGTCGCTGGACACGGCCGGCAGGAGCACGGGCACCGGC
GGCAAGAAGCGCGGGCCGGCGCCCTACAGGATCTTCAACCTCGGCAACACCTCCCCTGTG
ACGGTGCCCACGCTGGTGTCCATCCTGGAGAAGCACCTCCGGGTGAAGGCGAAGAAGCAC
GTGGTGGAGATGCCCGGCAACGGCGACGTGCCCTTCACCCACGCCAACATCTCGCTCGCC
CGGCAGCAGCTCGGGTACAAGCCGACCACCAACCTCGACGCCGGCCTCAAGAAGTTCGTC
AAGTGGTACCTCTCCTACTACGGCTACACCCGGGGATCCAAGAACTTGTGACCGCCGCGC
CGCGCCGCGCCGCCCCCCCTATTCTTCCCCTCCTCACCCAACCCCTGCTGATTCTTTATT
TCCGACCACTCCCGGATCAAACATTTTTAGTCCCATGGATGGATGGATCATCGTCAAGCT
TTAACAGCATTCTTGTCTCGATTCTTTTTGCGGGAATACTACGTTTTAGGGTGGTGTTCT
CCGGTGAAGAAAAAAAGAAAAATCCCGGATCGAATTCTTTCCTTTCCTTGCCGCCGCCGC
CGAGCGCCGACGAAGACGAAAGCAATGGAGCGAAACCTTTTNCTCATTGTTTATTTTTTC
GATTTTTT

Homology of Contig TA45888_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g54890.1	438	protein\|UDP-glucuronate 4-epimerase, putative, expressed
Brachypodium v1_2	Bradi3g53830.1	442
Arabidopsis v10	AT4G30440.1	429	\| Symbols: GAE1 \| UDP-D-glucuronate 4-epimerase 1 \| chr4:14881976-14883265 REVERSE LENGTH=429