barSeed - Barley Seed Development Database

Probe CUST_11257_PI390587928

Source Contig U35_5768

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11257_PI390587928	Hv_44K_v2	GTGAAGCTAATGTAGTCTGCGTGTATGCTAACTACTGTATGACCAAACGTTTAAATATAA	679	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375294	2791	2e-24	1754 - 1813	100	60 / 60	plus	ABC12619 ABC15354 ABC17993
Harvest21	ABC12619	738	3e-25	4 - 63	100	60 / 60	minus	ABC12619
Harvest35	U35_5768	742	3e-25	680 - 739	100	60 / 60	plus
Harvest35	U35_5767	983	6e-22	896 - 955	97	58 / 60	plus

Contig Sequence (742 bp)

>U35_5768 742 Hv_44K_v2
GCTTTGTCCGAGTCGGAGGTGAGCCGCCGTGGTTCTGAGCCAAAATCAAGAGCAAGGAAT
ATAGAGGACACAGTGGACACCGTGGTGAAGTGGAAGCTCTCATACGATAGCCATGGCAAT
GTGGTAAGAAAGGTTCGCGTTGGTGGTGAATTTGATTCAAATTCAGACAGTGGAAGGGAT
GACAAATTGGAACCCAAATGGAGGGCTCAGAATAGGTTTAGTCCAAGTGAGAACAGGGGA
GGTGGAGCAGGTCTGAAATATAGGCCTAATGCCAACAGTGGCGAGAGGCCAGGAGGATAC
ACCAAGGGTCATAATGGTGATGAAAGGGGCCAATTTGGTAACGGCTTTCCCTCAGACTTG
GAGGAGCCGACATGGAACCCCAGAAAAAAGAAGGAAGCTAGGAACAGCAATGGCAGCAGA
GATTACAACGGTGATACGAAAAGTAGGTTCAGGAGTGGTGGAAGTGGGGCTGCGAGGCGG
CTAGACAGTACTCGTCCTGTGATGAACGCCAACAGAGAAGATGGAGGAGGGCGGCGGCCG
AGGGGAGATGGATACTCGCTGCGACCAACATCCGAATTGCACCGCTCGGTTGACCGGAAT
GGGGGACGGCAGTTCAGAGGAGACGGATACTCGCTCCGACCAACATCAGAACTTAGATAA
AATGTACTGTTTGTTAAGAGTGAAGCTAATGTAGTCTGCGTGTATGCTAACTACTGTATG
ACCAAACGTTTAAATATAACGT

Homology of Contig U35_5768 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g46140.1	568	6e-67
Arabidopsis v10	None