barSeed - Barley Seed Development Database

Probe CUST_11209_PI390587928

Source Contig U35_10822

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11209_PI390587928	Hv_44K_v2	GGGTTGTTAAGAATGATCGATGGTTGTGTGTTATTGTTTCCCTTATCATTGTGATAATAC	429	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68042.1	1949	2e-24	1173 - 1232	100	60 / 60	plus	ABC06007 ABC15484
JLOC1	JLOC1_44979.1	1356	8e-25	1177 - 1236	100	60 / 60	plus
Harvest21	ABC06007	546	3e-25	58 - 117	100	60 / 60	minus	ABC06007
Harvest35	U35_10822	546	3e-25	430 - 489	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_10822 546 Hv_44K_v2
CCACCAGGCGTCCGTCAAGGGATTCAAGGCCGTGCCGCCCAACAACGAGCGGCAGCTGGC
GCTGGCAGTGGCGCGGCAGCCCGTGACGGTGTACATCGACGCCAGCACGTGGGAGTTCCA
GTTNTACTCCGGCGGCATCTTCCGGGGCCCCTGCTCCTCCGACGCCGCGAGGGTCAACCA
CGCCGTCACCATTGTCGGCTACTGCGAGGAGTTCGGTGAGAAGTTTTGGATAGCCAAGAA
CTCGTGGAGCAACGATTGGGGCGACCAGGGATACATCTACCTCGCCAAGGACGTTGTCGG
GCCGACGGGCACATGTGCCCTCGCCACCTCGCCCTTTTACCCGACGGCTTGACCGATGCC
GGCTTGCCGGTAGAGTTTTTAAATTTGCGTGCGCACAATAGTTGCTTACGTTTAGTGCAT
CGATCGTACGGGTTGTTAAGAATGATCGATGGTTGTGTGTTATTGTTTCCCTTATCATTG
TGATAATACAAAATAAAATATTGATTGTGTTTAAAAAAAAAAAAAAAGGGCGGCCCTCGC
GATCTA

Homology of Contig U35_10822 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g24600.1	362	2e-58	protein\|fruit bromelain precursor, putative, expressed
Brachypodium v1_2	Bradi2g07010.1	365	4e-71
Arabidopsis v10	None