- Probe CUST_1119_PI390587928
- Source Contig U35_21161
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1119_PI390587928 | Hv_44K_v2 | TGCTCCTGCGAATGCAAACCTCGAAGGTTTGATGCCAATAGATGATCTTGATACTACCGA | 663 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354009 | 2117 | 2e-24 | 1165 - 1224 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_67111.1 | 850 | 2e-24 | 512 - 571 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_67111.2 | 1207 | 2e-24 | 869 - 928 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_67111.8 | 1744 | 2e-24 | 294 - 353 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_67111.5 | 1765 | 2e-24 | 388 - 447 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_67111.4 | 4497 | 2e-24 | 420 - 479 | 100 | 60 / 60 | plus | ABC04289 |
| MLOC | MLOC_67111.7 | 3871 | 9e-22 | 1102 - 1156 | 100 | 55 / 55 | plus | ABC04289 ABC04548 ABC43241 |
| JLOC1 | JLOC1_44269.5 | 2192 | 8e-25 | 417 - 476 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44269.4 | 2234 | 8e-25 | 417 - 476 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44269.3 | 1936 | 8e-25 | 420 - 479 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44270.1 | 3398 | 5e-22 | 2767 - 2821 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC14533 | 727 | 3e-25 | 667 - 726 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_21161 | 724 | 3e-25 | 664 - 723 | 100 | 60 / 60 | plus |
Contig Sequence (724 bp)
>U35_21161 724 Hv_44K_v2 CGATCATCCACTAACCCACTATCCTTCCGTTCCCAGCCAGCAGCCAGCAGCCGGCAATCA ATCAGTCTCTCCCCCTTGGTGATTTCATCTTCCCGACATCTCTGATAGCAGCCCATCCTC GTCGATCTCTGTAGAAATGGAGAATAATCTACCAGTCAATGTCAGAGAGTATCAAGAACT TGCCAAGAAAGCACTGCCAAAGATGCACTATGATTATATCAATGGAGGAGCTGAGGATGA ACACACATTGAGGGACAATATGGCAGCATATGGAAGAATTTTGTTGCGACCTCGGGTTCT TGTAGATGTCAGCAACATAGACATGTCGACAAACTTATTGGGATATGATCTGCCCTCACC CATAATTGTTGCACCAACGGGATCACACAAATTGGCAAATCCAGAAGGGGAGGTGGCTAC AGCAAGAGCTGCAGCATCATGTAATACCTTAATGGTGCTATCCTTCTCATCCAGTTGCAA AATCGAGGAAGTTGCCTCCAGTTGTAATGCGATTCGTTTTTATCAGTTATATGTGTTTAA GAACAGAGATGTTTCAGCAACATTGGTACGGCGGGCTGAGAGTCATGGATTCAAGGCAAT TGTTTTGACAGTTGACACTCCTATGCTCGGTCGACGTGAGGCAGATATCAGAAATAAAAT GGTTGCTCCTGCGAATGCAAACCTCGAAGGTTTGATGCCAATAGATGATCTTGATACTAC CGAC
Homology of Contig U35_21161 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g42440.4 | 252 | 1e-112 | protein|hydroxyacid oxidase 1, putative, expressed |
| Brachypodium v1_2 | Bradi1g20870.1 | 367 | 2e-122 | |
| Arabidopsis v10 | AT3G14130.1 | 363 | 9e-87 | Aldolase-type TIM barrel family protein | chr3:4685844-4687852 REVERSE LENGTH=363 |