barSeed - Barley Seed Development Database

Probe CUST_11192_PI390587928

Source Contig U35_38479

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11192_PI390587928	Hv_44K_v2	GAAAGGTTTGCAGACAAGTGACACTAACGTTTCAAGAGACATGTCCTTATATTATTCTTC	579	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76388.9	1704	2e-24	636 - 695	100	60 / 60	minus	ABC08898
JLOC1	JLOC1_50938.1	1545	8e-25	739 - 798	100	60 / 60	plus
Harvest21	ABC34464	671	3e-25	580 - 639	100	60 / 60	plus
Harvest35	U35_38479	671	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_38479 671 Hv_44K_v2
GCTCATCTCTCACTTTTCATGTGTACAGTGGTGCTGCCTTGCTAGTTGAAGCTGCAAACA
TGGGTGATCCAGAGGCACAGTATGAACTTGGATGTCGGCTAAGAGTCGAGGTTTTCACAT
TTCATGTGCTTTTTGCCCCGTCCTGTTCCACCTTTTTTTTGTGGGGCACTTTATTAATTG
GATCTTAGTTATTTGTTAGGCAAATGGTAGTTTCATTCTTTATACCATTTGTGTGGAATA
TGTCTTCATCTCAGTTGATGGTTACCTTTGTTGCTTGTAGAATGATCATGTTCAGTCTGA
TCAACAGGCCTTCCATTATATAGAGAAAGCTGTTGACCAGTTGCATCCTGCTGCTTTGTA
TCTTCTTGGTGCTGTGTATATAACTGGGGATTGCGTCAAGAGGGACATAGCTTCAGCTAT
GTGGTGTTTCCATAGAGCTTCAGAAAAGGTGGTAAATGTGATAGATCAACTTAAAAATTG
TCTTATTTACTTTCAACCCATGAATCACGTTGTTATTTATGTTTTTCTGACGTCTCAGGG
ACATGCTGGAGCTGCAGTTGCATATGGTTCACTTCTTCTGAAAGGTTTGCAGACAAGTGA
CACTAACGTTTCAAGAGACATGTCCTTATATTATTCTTCTCGNGTTGGCTATTTTAGAGT
ATAAACAGGTT

Homology of Contig U35_38479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None