barSeed - Barley Seed Development Database

Probe CUST_11158_PI390587928

Source Contig U35_9410

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11158_PI390587928	Hv_44K_v2	TATTTTTGAAGGACGAGCAAAGTTTGCTGGGCTCCAGCTCAGCCCTGAATTAAGGCAAAT	1102	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.336	1.652	1.127	0.861	0.430	0.663
Raw	500.159	984.988	575.247	693.938	121.852	201.728

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC19362	896	3e-25	29 - 88	100	60 / 60	minus	ABC19362
Harvest35	U35_9410	1190	3e-25	1103 - 1162	100	60 / 60	plus

Contig Sequence (1190 bp)

>U35_9410 1190 Hv_44K_v2
GGGTTGCACACCTATTGGCAAGGTCAAACTTCAAATCTTGAAAAGAAGTCTGACCTTGTT
GCCGTAAGAAATATTGTAAGATCAAGAAGGAATCCAAAAGATGCTGGTGATTTGTCCAGT
CGCCATGAGCTTGTTACAGAAATAGATTCTAACTTACATCCTGGCCTTTTCGATATTGTT
AAGAATTGCACATATGTTGGAGTTGCGGATGAAGTTTTCGCTTTGATACAACACAATACC
CTCTTATACCTTGTCAATGTGGTAAATGTTAGCAAAGAACTCATGTACCAACAAGCCTTG
AGCCGTTTTGGGAACTTCAATGCTATAAAACTCATCGAACCAGCTCCACTTCTGGAGTTG
CTGAGAATGGCACTGAAAGATGACGAGTCAATGAGTGATGTAAATGAGAAGGAGAAACTA
GAAATTGCACCAAGTGAACACTGAGATACTGAAAGAAAATGCTGAGATGATTAATGAGTA
CTTCTCTATTCACATTGATCAAGGTGGCAACCTGACCAGACTTCCTGTTGTACTTGATCA
GTACACTCCTGATATGGATCGCCTTCCACAGTTCATGTTGAGCCTAGGAAATGATATTAC
CTGGGACGATGATAAAGAGTGCTTCAGAACGGCAGCAGCTGCTATCGGAAACTTCTATGC
GCTTCATCCTCCCATCCTTCCAAATCCATCTGGCAAAGGCATTCAGTTATACAAGAAAAA
TAAAGATTGCATGGGAAGTGCTGAACAGGCTGATAACAATTTACCAAGTACAGATGAAGA
TGACATCGATCAAGAGCTGCTTGCGGAAGCAGAGGCAGCATGGGCTCAACGTGAGTGGAC
CATCCAGCACGTCTTGTTCCCGTCGATGCGACTTTTCCTCAAGCCCCCTAAGTCGATGGC
AACTGATGGAACGTTTGTCCAGATTGCTTCTCTAGACAAGCTTTACAAGATCTTCGAGAG
ATGCTAGCCGACAAGCGGCATGTCGAGAAGGAAGGGAAGAGCGCGACGCGACCGACGCCC
TTGCCGGTTCCTTCCGGGACGTGTGTATATAATGCGGTGTCACTGTTTTTTTCCCCCCCC
TTTTTTCCGATAGGGCTGTAAATATTTTTGAAGGACGAGCAAAGTTTGCTGGGCTCCAGC
TCAGCCCTGAATTAAGGCAAATGCCGAATATTGGCTCTCTAAAAAAAAAA

Homology of Contig U35_9410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g72880.1	725	8e-127	protein\|DNA mismatch repair protein Mlh1, putative, expressed
Brachypodium v1_2	Bradi2g61370.1	726	2e-139
Arabidopsis v10	AT4G09140.1	737	6e-90	\| Symbols: ATMLH1, MLH1 \| MUTL-homologue 1 \| chr4:5817107-5821035 REVERSE LENGTH=737