- Probe CUST_11142_PI390587928
- Source Contig U35_9426
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11142_PI390587928 | Hv_44K_v2 | GACGGCTGAACGAACAAGTAGAGTTATATCTTTTGATTAAAGAAAAGACGATGAAACTCA | 601 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.726 | 1.550 | 1.173 | 0.891 | 0.319 | 0.358 |
| Raw | 7085.287 | 10161.220 | 6639.343 | 8019.727 | 990.106 | 1222.687 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6342.1 | 2736 | 2e-24 | 1394 - 1453 | 100 | 60 / 60 | minus | ABC09298 |
| MLOC | MLOC_6341.2 | 4448 | 2e-24 | 1249 - 1308 | 100 | 60 / 60 | minus | ABC09298 |
| MLOC | MLOC_6341.1 | 4344 | 2e-24 | 1145 - 1204 | 100 | 60 / 60 | minus | ABC09298 |
| JLOC1 | JLOC1_4127.2 | 1864 | 8e-25 | 1188 - 1247 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_4128.1 | 2579 | 8e-25 | 1152 - 1211 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4127.1 | 1751 | 8e-25 | 1075 - 1134 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC22224 | 657 | 5e-23 | 602 - 657 | 100 | 56 / 56 | plus | |
| Harvest35 | U35_9426 | 677 | 3e-25 | 602 - 661 | 100 | 60 / 60 | plus |
Contig Sequence (677 bp)
>U35_9426 677 Hv_44K_v2 GTTAAGTCGTGGCTACCTGCAAGATCTATTGTCATGGAGTGTTTGCTGTCAAGAGGAAAT GTTGATCCAAGTGGAGAAATCATGGTTTTAGATAGATTCTGCCCGTGGAAACTTCATCTA TTTGAGCTAGAGCAGGAGCTGAAGACTGATCCCCTGACCAAGTATGTGCTGTATGAGGAT GAGAGGAGCAAAGGCTGGCGAGTGCAAGCCGTCTCTGTTGCACCCGACAGATTCGAGAGC CGAAAGGCTCTCCCAGAGAAGTGGAGGGGCATGAGAGATGATGAACTGTCCAAGGAAACC GGCATCCCTGGCTGTGTGTTCATCCATATGAGTGGATTCATTGGTGGGAACAAGACCTAC GAGGGAGCCTTGGAAATGGCCAGAGCTGCCCTCAAATGCTAATTCAACCGAAGCAACAAG CAGTAAAACAGTCTCACCGTGTTATGATTGAGTTTCAGTGCAGCGAATTTACCATTGACA TGTCGGCATTTGACTATGTATGCTCCTTGGCGTAAAACATCCACCTGATAGCAGAGATTG GTTATCTTATCCGTACGAGGCTGAACGAACAAGTAGAGTTATATCTTTTGATTAAAGAGA AGACGGCTGAACGAACAAGTAGAGTTATATCTTTTGATTAAAGAAAAGACGATGAAACTC AAAAAAAAAAAAAAAAA
Homology of Contig U35_9426 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g46150.1 | 380 | 7e-82 | protein|GAMM1 protein-like, putative, expressed |
| Brachypodium v1_2 | Bradi3g52006.1 | 386 | 4e-88 | |
| Arabidopsis v10 | AT5G41970.1 | 373 | 3e-69 | Metal-dependent protein hydrolase | chr5:16791198-16792961 FORWARD LENGTH=373 |