barSeed - Barley Seed Development Database

Probe CUST_11082_PI390587928

Source Contig U35_7663

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11082_PI390587928	Hv_44K_v2	GGGTCCATGCTTGGTTAACTTCTGAGATTTGAATTCATGTGGGTTGGTTTAAGCAAAAAA	791	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4480.1	1231	3e-22	14 - 69	100	56 / 56	minus	ABC13287 ABC24126
JLOC1	JLOC1_2790.5	1391	1e-22	1140 - 1195	100	56 / 56	plus
JLOC1	JLOC1_2790.4	2777	1e-22	2526 - 2581	100	56 / 56	plus
JLOC1	JLOC1_2790.3	1910	1e-22	1659 - 1714	100	56 / 56	plus
JLOC1	JLOC1_2790.2	1940	1e-22	1689 - 1744	100	56 / 56	plus
JLOC1	JLOC1_2790.1	1095	1e-22	844 - 899	100	56 / 56	plus
Harvest21	ABC24126	563	3e-25	493 - 552	100	60 / 60	plus	ABC24126
Harvest35	U35_7663	862	3e-25	792 - 851	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_7663 862 Hv_44K_v2
TTAATGCATACATATGTCATACGGAGTATGATTCTTCCGCTATGATTGGTAAGTTTGGTA
TGAAGGTTTTCCGAGTCATACCTTGAGATTGACAAAATAACATTTCACAAGAGAGTCATT
ATTACCCATTTATTGAAGAGGATACAATTGTTTTAATCCTTTGGTCAAGTCAAGCAACTG
TTTGCTGCACACCGTTATATTCACTGCCTTTATGAACTGCTGAAGTTTTTTTTTAACAAG
TTTAGTTTTTTGTATCTCAAATTCTGCCTTCTATAAAGCTAATGTACGCCTAGGCGTACT
CTCGATTTTTTTTTGGTAGCTACCATGATGTCATATGCTGACCATTCCTTAATTTTTGTT
GGTATTCCAGGAGCTGGAGAAGCGGAGAGAGGAACTCGAGGCACTGTTAATTGCTGAGAG
GTCCGAATTGGTCTGATGAATCTGAGCTTGACGATCTAACATTTCTCACGTGGTGTAAAT
AGATTGTTGCTCCTGCTAATTGCATACTGCTTTTCACGGTCATCGATTTGTCACCCGAGG
CATTTTTGTTGGGAGTGCCCCCCTTTTCCTGTGTTCCAATTTTCGTCTAGATTTCTGCTG
AATTTGGTTTCTGGTGAGCGTTTTCGTGGATGCATGGATCAAGCGGGATTGTGTTGTCAT
AGTTGTGTTGGATTTATGTCAATGACGTAGGCCTCAAAATGTACCATGCTGACATGGTGT
GTGTTTGTTGTCTCTGTAGTCTTTGTCTGAACCGTGGATGCTAAATAATTTCTTGGATTT
TGTGTAATAGAGGGTCCATGCTTGGTTAACTTCTGAGATTTGAATTCATGTGGGTTGGTT
TAAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7663 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None