- Probe CUST_11078_PI390587928
- Source Contig U35_7668
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11078_PI390587928 | Hv_44K_v2 | TAGTAATAGCAGATTGCATACTAAAGGTCTAGCTAAGAGCTCTAACATGTGTAGTGATAA | 670 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376402 | 3395 | 7e-23 | 659 - 718 | 98 | 59 / 60 | plus | ABC05377 ABC38116 |
| MLOC | MLOC_5141.11 | 4904 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC05377 ABC38116 |
| MLOC | MLOC_5141.6 | 2418 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC05377 ABC38116 |
| MLOC | MLOC_5141.8 | 3786 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC05377 ABC38116 |
| MLOC | MLOC_5141.9 | 2952 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC38116 |
| MLOC | MLOC_5141.10 | 2959 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC05377 ABC38116 |
| MLOC | MLOC_5141.3 | 2418 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC38116 |
| MLOC | MLOC_5141.4 | 2201 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC38116 |
| MLOC | MLOC_5141.7 | 2722 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC38116 |
| MLOC | MLOC_5141.2 | 2774 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC38116 |
| MLOC | MLOC_5141.12 | 5459 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC05377 ABC38116 |
| MLOC | MLOC_5141.5 | 2238 | 7e-23 | 204 - 263 | 98 | 59 / 60 | plus | ABC38116 |
| MLOC | MLOC_5141.1 | 4158 | 7e-23 | 205 - 264 | 98 | 59 / 60 | plus | ABC05377 ABC38116 |
| JLOC1 | JLOC1_3286.11 | 4463 | 4e-23 | 204 - 263 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_3286.10 | 4824 | 4e-23 | 204 - 263 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_3286.9 | 4610 | 4e-23 | 204 - 263 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_3286.8 | 4285 | 4e-23 | 204 - 263 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_3286.7 | 5076 | 4e-23 | 204 - 263 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_3286.6 | 3937 | 4e-23 | 205 - 264 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_3286.5 | 4161 | 4e-23 | 205 - 264 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_3286.4 | 4305 | 4e-23 | 205 - 264 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_3286.3 | 5291 | 4e-23 | 205 - 264 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_3286.2 | 4825 | 4e-23 | 205 - 264 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_3286.1 | 4841 | 4e-23 | 205 - 264 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC19518 | 707 | 3e-25 | 640 - 699 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7668 | 738 | 3e-25 | 671 - 730 | 100 | 60 / 60 | plus |
Contig Sequence (738 bp)
>U35_7668 738 Hv_44K_v2 AGTATGAAAGAGAAGAAGAGAATAATGAATATACTGTAAGTAAAATTCCTCTTCCCCTCG CCGCCGCCTGCCGCCGCCGTTGAAGCTGAAGGGAAGAGGAGGGGGAGGACGACAACCGGG CGCCCTGCTGCCTCCGGCACGAGCTGCGGCCTGCTGCTGCCGGTACACAGCCTCGTGTGC TAACCACCGCCCCGGAGGCGGTTCTTGAGTTTTGGTCGCTGGTTGGGCGGTGGCGGCGCT GCGGCTAGCTGGTTGCTGGGAGAGAGATGGCGCCAGTGAGGAGGAAGCGCGGCGCATCCG CGGCTGCCGCAGCGGCGGCGGCCGCAGCGCAGTGGAAGGCCGGCGACCTGGTGCTCGCCA AGATGAAGGGCTTCCCCGCATGGCCAGCCATGATAAGTGAACCAGAGCAGTGGGGTCTAC CTTCTGTTAAAAATAAGCGTCTGGTCTACTTCTATGGAACTAAACAGATTGCTTTCTGCA ACTATGCAGAACTGGAGGCGTTCACTGAGGAGAAAAGGAGGTCTCTACTTGCTAAGCGAC ATGGCAAAGGGGCTGATTTTGTAGGAGCAGTTGACGAGATAATTGATGTTTACGATTCTT TGAAGGAAGATAGTAACAAGCCTGATCTGACTGCCGATGAAGTGAAACCAGGTGAAGAAA ATCTTGGTGATAGTAATAGCAGATTGCATACTAAAGGTCTAGCTAAGAGCTCTAACATGT GTAGTGATAAAAAATTAG
Homology of Contig U35_7668 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g24339.1 | 1494 | 7e-58 | protein|PWWP domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g61937.2 | 1431 | 4e-68 | |
| Arabidopsis v10 | None |