barSeed - Barley Seed Development Database

Probe CUST_11058_PI390587928

Source Contig U35_7688

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11058_PI390587928	Hv_44K_v2	ATGGGAACAGCTGATATAAAGGCCACATTTGGGAAGAGCCAAAAGCATGAGCTGAATGTA	1381	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.616	0.851	1.818	2.278	1.004	0.921
Raw	131.729	289.343	525.799	1061.634	164.595	161.025

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70556.2	3216	2e-24	2185 - 2244	100	60 / 60	plus	ABC05119 ABC14390
JLOC1	JLOC1_46827.1	3308	8e-25	2185 - 2244	100	60 / 60	plus
Harvest21	ABC14736	1441	3e-25	1382 - 1441	100	60 / 60	plus
Harvest35	U35_7688	1441	3e-25	1382 - 1441	100	60 / 60	plus

Contig Sequence (1441 bp)

>U35_7688 1441 Hv_44K_v2
GAAATATCAAAATCAATAGAGGCTGCACAGGGTGGTTTGTTCTTGGAAGAGCTGAATGCG
AAGTGGATGGATCACAACAAGGCGTTGCAGATGATCCGGGATATTCTAATGTACATGGAT
CGGACTTATGTCCCGACGTCCCATAGGACACCTGTTCATGAGCTTGGTCTGAATTTGTGG
AGGGATCATATAATTCACTACCCAATGATCCATGGTCGGCTGCTTGACACCCTTCTAGAT
CTTATTCACAGAGAAAGAATGGGTGAAGTGATAAATAGAGGCCTGATGAGGAGCATTACA
AAGATGTTAATGGATCTTGGTCCTGCTGTGTATCAAGATGATTTTGAGAAACCATTTTTG
GAAGTTTCTGCTAGCTTAGTACAGCGGGGAATCTCAAGAGTTCATCGAGTGTTGTGATTG
TGGTAACTACCTTAAGAAGGCTGAGAGGCGGCTCAATGAGGAAATGGAGCGTGTCTCACA
CTACTTGGATGCTGGCAGTGAGGCAAAGATAACTAGCGTGGTGGAGAAAGAGATGATAGC
CAATCACATGCATAGATTGGTCCACATGGAAAACTCTGGCCTTGTTAACATGCTTATAGA
TGACAAATATGAAGATTTGGGCAGGATGTACACCTTATTCCGAAGGGTTTCTGATGGTCT
ATCAACAATCAGGGATATGATGACTTCATACCTGAGAGAGACAGGGAAGCACTTAGTGAC
AGATCCGGAGAGATTGAAAGACCCAGTGGATTTTGTTCAGTGCTTGTTAAATGAGAAGGA
TAAGCATGATAAGATCATCAATGTTGCTTTTGGCAATGACAAAACCTTCCAAAATGCTCT
GAATTCATCCTTTGAGTTCTTCATCAACTTAAACAACAGGTCACCTGAATTCATATCACT
GTATGTTGATGACAAACTCCGCAAAGGACTGAAAGGGGCAACAGAAGAGGATGTGGAGGG
TATACTGGACAAAGTCATGATGCTGTTTCGGTACCTTCAGGAGAAGGATGTGTTTGAGAA
GTACTATAAGCAGCATTTGGCGAAAAGACTCCTGTCTGGTAAGACAGTTTCCGATGATGC
TGAGAGGAGTATGATAGTCAAACTCAAGACAGAATGTGGGTACCAGTTCACCTCCAAATT
AGAGGGCATGTTCACTGACATGAAGACATCTCAGGACACCATGCAGGATTTCTATGCCAA
GAAATCCGAGGAACTTGGTGATGGCCCTACACTTGATGTCCACATTCTCACAACTGGCTC
TTGGCCAACACAGCCCAGCCCTCCCTGCAGCCTTCCACCTGAAATCCTTACAGTATGTGA
GAAATTTCGTGGATATTATCTTGGAACTCACAGTGGGCGGAGGTTAACATGGCAAACAAA
TATGGGAACAGCTGATATAAAGGCCACATTTGGGAAGAGCCAAAAGCATGAGCTGAATGT
A

Homology of Contig U35_7688 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g51180.1	737	protein\|cullin, putative, expressed
Brachypodium v1_2	Bradi3g59330.1	737
Arabidopsis v10	AT1G26830.1	732	\| Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 \| cullin 3 \| chr1:9296063-9298374 FORWARD LENGTH=732