barSeed - Barley Seed Development Database

Probe CUST_11048_PI390587928

Source Contig U35_7698

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11048_PI390587928	Hv_44K_v2	CTGATGGAATCTCCATTCCCCTGTTCTCTTGTACTGAGTCAAGTGTTACGAGCATCTAAA	621	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7936.2	3596	3e-22	3135 - 3193	98	58 / 59	minus	ABC07356 ABC07358 ABC11343 ABC16574
MLOC	MLOC_7936.1	3358	3e-22	3026 - 3084	98	58 / 59	minus	ABC07356 ABC07358 ABC11343 ABC16574
JLOC1	JLOC1_5252.1	2706	1e-22	2428 - 2486	98	58 / 59	minus
Harvest21	ABC16574	695	3e-25	15 - 74	100	60 / 60	minus	ABC16574
Harvest35	U35_7698	695	3e-25	622 - 681	100	60 / 60	plus

Contig Sequence (695 bp)

>U35_7698 695 Hv_44K_v2
CAGGCGCGGGCCTTGATGTCTTCGAGCACGAGCCCAAGGTGCCGGCAGAGCTGTTCTCCA
TGGACAATGTGGTTCTCTCGCCCCACGTGGCGGTGTTTACGGAGGAGTCCAGGTCGGACC
TGTGTCTGCACACCATTGGCAACCTTGAAGCCTTCTTTTCCGGTCAGCCATTGCTCACTC
CAGTGCATGCTGATTCTCTGGTGCAGTGAGGGCAAGTCTGGTCCTACTAGATCTGTTTGG
GAGTGATATTATACAGATTGCCACAAATCCCTACCTAAGCAAAATACCAAAATGACGGAT
AAGATATTCCATGAAAGGCTAACCCATTTACCCCACAAAGGTGCCACTACTTCCTTCTCT
CTTTATTCTCTCTGTAGTCCTCTTTTCTTGAATAATAGAGTACAAATTATACACCTTTTA
TTTGTATTCTGCATAATCAAATACGAGCCACCAAGGTGATAACTGCATGGTCCTTACCAT
TAACATGCTTGTCTGCTTTATGTGCTGCTGCATTTTGATTTGAATATTATTTGGCAACCA
TTAGTAATGCCTGGTTTGTAAAAAAAAAATAGTGCCTGATTTCTTGCATCACGTGCTATA
AATAATTATTCTTGTGTAAAACTGATGGAATCTCCATTCCCCTGTTCTCTTGTACTGAGT
CAAGTGTTACGAGCATCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7698 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None