barSeed - Barley Seed Development Database

Probe CUST_11017_PI390587928

Source Contig U35_24704

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11017_PI390587928	Hv_44K_v2	GAGGACTAGATGCCTCCCATAGTTTTGTTTGTTTTGATTTTTAAGTCATTTGGACTCTTG	592	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11896.2	1965	2e-24	1806 - 1865	100	60 / 60	plus	ABC13704 ABC21141 ABC26541 ABC50975
JLOC1	JLOC1_7933.1	1959	8e-25	1845 - 1904	100	60 / 60	plus
Harvest21	ABC21141	685	3e-25	34 - 93	100	60 / 60	minus	ABC21141
Harvest35	U35_24704	685	3e-25	593 - 652	100	60 / 60	plus

Contig Sequence (685 bp)

>U35_24704 685 Hv_44K_v2
TATAGTGGTTGGATCATCGGATACATCAGTTCCTTTATATAGAGAATGCATCCACCCTCG
AATTCCTCAGTTGGCAATAGTTGGATACTCTGAGAGCCTTACCAACATATATGCCTCGGA
GAGGATGGCCAATTGGGTAATCCATTTCCTAGCTGGCGGATTCCAGTTGCCAAGCATAAG
ATGCATGGAAGAGAATGTAGCAGAGTGGGCAAAGTACAAGGATCTTTACAATGGAAAATA
TTTCCGCAGATCTTGTATAAGCACCGTGAATATTTGGTTTAATGATTTGTTGTGCCAAGA
CATCGGATGCAACCCTAGAAGGAAGAAAGGATTCCTGGCTGAATGGTTCCAGCCATATGG
GCCTGCTGACTATGCAGGTATTTGCTGAAGACAACAGCACATTTCTCACTAGTGTATTCA
ATAGGAAAAGAAGCTGAGACAAGAGTGCTACCTTCAGGGCTCTATAGATGATTTTAGGAA
GTGTTTGTCTTGGCAAGTTTAGTGTTACCATAACTACAGAAAAATAGCTCTACACTTTTC
TGAATGCATCAGTGCTCTTAAGATGCCCTTTGCCCTTTCAGAGTGGCTAGAGGAGGACTA
GATGCCTCCCATAGTTTTGTTTGTTTTGATTTTTAAGTCATTTGGACTCTTGTGAAATGT
ATTTTTTATTACTATTGTATAATAT

Homology of Contig U35_24704 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37620.1	520	5e-78	protein\|flavin-containing monooxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi4g37110.1	520	1e-84
Arabidopsis v10	None