barSeed - Barley Seed Development Database

Probe CUST_10996_PI390587928

Source Contig U35_24717

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10996_PI390587928	Hv_44K_v2	TTATTCTGCCTTTGTTCAACATATTGGCATTCCTTCAGTCGACATGGCTATTGGGACAGG	679	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367813	2476	2e-24	1625 - 1684	100	60 / 60	plus	ABC13378
MLOC	MLOC_68917.3	900	2e-24	699 - 758	100	60 / 60	minus	ABC13378
MLOC	MLOC_68917.2	1321	2e-24	1050 - 1109	100	60 / 60	minus	ABC13378 ABC13379
MLOC	MLOC_68917.1	1593	2e-24	1099 - 1158	100	60 / 60	minus	ABC13378 ABC13379
JLOC1	JLOC1_45644.1	1563	8e-25	257 - 316	100	60 / 60	plus
Harvest21	ABC21099	626	3e-25	564 - 623	100	60 / 60	plus
Harvest35	U35_24717	742	3e-25	680 - 739	100	60 / 60	plus

Contig Sequence (742 bp)

>U35_24717 742 Hv_44K_v2
AGGAGGCGATGGCCACGGACGACATGCCGGGGATACCGGCGCTGCCGGTGTCGGGGAGGG
ACGGGGAGGCGATACTCCGGCTCATCGGCGGGGATGTCGCGCCAGAGGATTGGCAAGGCA
GCGACGGCGACGGCGTGCCGGTTTACCGCCTCGGGCCCGGGCCGGCGGTGCTCAATCTGA
CCTATACAGGGAATGAGACGATAGCTACTATTCAGAATGTCATTTCAGTGATTGAAGGGA
AAGAAGAACCAGACAGGTATGTTATTCTTGGCAACCATCGCGATGCGTGGACATTTGGGG
CAGCTGACCCAAACAGCGGAACGGCAGCCTTGCTTGAGCTAGCTCAAAGGCTGTCTAAGC
TACAAAACAAGGGTTGGAGACCTCGTCGAACCATCATTTTGTGTAATTGGGATGCCGAAG
AGTACGGATTGATAGGATCCACAGAATGGGTTGAAGAGAACAGAGCAATGCTAACTTCGA
GAACTGTTGCTTACCTGAATGTAGATGTTGGGGTGTCTGGTTCTGGAGTCGACGCATCAG
CCACTCCTCAACTTGATGAGTTACTTAAGCAGGCGAGTAAAAAGGTTCAAAATCCGGATA
ATGGAACAGAAAGTCTGTATGACATGTGGATGGCTTCTGATAGTTCTCTGATTGGAAGGT
TAGGAGGTGGAGGATCAGATTATTCTGCCTTTGTTCAACATATTGGCATTCCTTCAGTCG
ACATGGCTATTGGGACAGGATA

Homology of Contig U35_24717 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54010.1	729	2e-126	protein\|peptidase, putative, expressed
Brachypodium v1_2	Bradi2g49510.1	725	4e-130
Arabidopsis v10	AT5G19740.1	681	5e-91	Peptidase M28 family protein \| chr5:6673986-6676767 FORWARD LENGTH=681