barSeed - Barley Seed Development Database

Probe CUST_1098_PI390587928

Source Contig U35_21170

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1098_PI390587928	Hv_44K_v2	TTGACTGGTCACAAGCACAGAAGCCTTTATGTATTTTCTGACTGCATTTTTCTCAAAAAA	1766	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5803.1	2118	3e-22	205 - 260	100	56 / 56	minus	ABC15448 ABC22799
MLOC	AK377138	3254	3e-21	3201 - 3254	100	54 / 54	plus	ABC15448 ABC22799
JLOC1	JLOC1_3756.2	2229	1e-22	1984 - 2039	100	56 / 56	plus
JLOC1	JLOC1_3756.1	1992	1e-22	1747 - 1802	100	56 / 56	plus
Harvest21	ABC22799	659	5e-23	142 - 197	100	56 / 56	minus	ABC22799
Harvest35	U35_21170	1837	3e-25	1767 - 1826	100	60 / 60	plus
Harvest35	U35_34360	736	5e-23	119 - 174	100	56 / 56	minus
Harvest35	U35_22509	778	5e-23	582 - 637	100	56 / 56	plus

Contig Sequence (1837 bp)

>U35_21170 1837 Hv_44K_v2
GGTTGATACCNGAAGATTAAGGATGCTTCTTAACATAGAAATATGGCCATGGGGCAAGAT
GGGCAGACAAACAGTGGTGGGGATATTATTCCAAATATTGGTTCTCCTAGCCAAAGTGGT
GGATCACGAACAGATATAGACATGCTAATAAAGAAGAAAATTGCTCATTTACAACAGCAA
CAGCAGCTTCAGCAATCTACAGTCTCCAGTCAGCAATCTCAGAGCTCAAATCAGCTTCTC
CAGCAACAGGAAAAGCCTGGAGTTGGATGCACGCCTATTGATGGAAGCATACCAAACTCT
TTTGTAGTAGCTGACCAAGCATCAAAGAAGAGAAAGAAACCTGTCTCCTCTAGTAGAGCT
AATAGTTCAGGAACAGCAAATACTGCTGGGCCATCTCCAAGTTCTGCACCTTCGACGCCT
TCCACTCACACACCAGGAGATGCAATGTCCATGCCACAGCTGCTGCATAATGGTGGTCCG
TCGAAACCATTGATGATGTTTGGTTCTGATGGCACTGGAAGCTTGAACTCTCCAGTAAAC
CCACTGGGTGATGTGGACCGTTTGCTGGAAGATGGCTCCTTGGATGAAAATGTAGACTCA
TTTTTATCACAGGAGGACATGGATCCTCGGGAAACCATGGGACACTGCATTGATGCCAGT
AAAGGGTCTGGTTTCTCTGAGGTTGCAAAAGCCCGTGCGAGTACAAGCAAAGTTACCTGT
TGCCATTTCTCGTCAGATGGAAAACTGCTCGCCACCGGAGGCCACGATAAGAAGGCTGTT
TTATGGTTTACAGATGCCCTAAACCCCAAATCTACATTAGAAGAACACTCGATGCTTATT
ACAGATGTTCGATTTAGCCCAAGCATGACCCGCCTTGCAACATCTTCCTTTGACAAAACT
GTGCGGGTTTGGGATGCTGACAATCCAGACTATTCCCTCCGCACTTTCACGGGTCATTCC
GCATCTGTTAAGTCACTTGATTTTCATTCAAATAAAGAAGACATCATTTGCTCCTGTGAT
AGTGATGGGGAAGTGCGCTGCTGGAGCATAAACAATGGTAGCTGTGTGACGTGTGTTAGG
GTCTTCAACGGAGGTGCAACTCAGTTGCAGTTGAGATATCAACCTCGTCAAGGGAAATAT
CTTGCAGCTGCCTCTGAGAAGATGATATCAATATTGGATGCAGAAACACTACAAGTGTGT
AGGAATGCCTTACAGGGACACATAAAGAACATCCAGTCGATTTGTTGGGATGCTGCGGGT
GACTATCTGGCCTCTGTAAGTGAAGATTCTGTCAAGGTGTGGTCATTTACTTCAGGAAAT
GACGGCGACCGTGTGAATGAGTTGAATTGCAGTGGAAACAAGTTCAATTCTTGTGTTTTT
CACCCGAATTATCCGTCATTGCTTGTAATTGGTTGTTACGAGTCCTTGGAACTTTGGGAC
ATAAGGGAGAAGAATACGGTGACCATCAGCAACGCCCATGACGGCTTAATTGCAGCCCTA
GCTGCATCAAATGCATCAGGGTTGGTCGCCTCAGTAAGTCATGATAAGCTTGTCAAGCTC
TGGAAGTGATATCAGGGCGTTTTTCTGCTGCAGATAAACACATGACGAGGGCAGCTCATG
AAAATGTCTTCAGCTATCTGTGTTCAAGAACTAACCCAATTTGATGTCATCCCAGTTGCT
GCAGGTGCCCTTGGATAGGTCTAACTATCCTTGTAGAATGTACCATACTTGTAGTGGCCT
GCGCAAACTCTAGAGTGTTGTTATCATTGACTGGTCACAAGCACAGAAGCCTTTATGTAT
TTTCTGACTGCATTTTTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21170 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g42260.1	877	protein\|transcriptional corepressor LEUNIG, putative, expressed
Brachypodium v1_2	Bradi2g43087.1	911
Arabidopsis v10	AT4G32551.2	969	\| Symbols: LUG \| LisH dimerisation motif;WD40/YVTN repeat-like-containing domain \| chr4:15707863-15713359 FORWARD LENGTH=969