barSeed - Barley Seed Development Database

Probe CUST_10983_PI390587928

Source Contig U35_9582

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10983_PI390587928	Hv_44K_v2	CACGCCACATGCCGTCACAGTTGATACGTACATTCTATTCTACACTAATAATGATCATGA	487	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364175	3392	2e-24	3309 - 3368	100	60 / 60	plus	ABC03031 ABC22235
MLOC	AK370334	2412	2e-24	2326 - 2385	100	60 / 60	plus	ABC22235
MLOC	MLOC_64767.1	3610	2e-24	89 - 148	100	60 / 60	minus	ABC22235
MLOC	MLOC_64767.2	3163	2e-24	89 - 148	100	60 / 60	minus	ABC22235
MLOC	MLOC_64767.3	3120	2e-24	44 - 103	100	60 / 60	minus	ABC22235
MLOC	MLOC_64767.4	3731	2e-24	24 - 83	100	60 / 60	minus	ABC22235
JLOC1	JLOC1_42558.4	3213	8e-25	3035 - 3094	100	60 / 60	plus
JLOC1	JLOC1_42558.3	3052	8e-25	2874 - 2933	100	60 / 60	plus
JLOC1	JLOC1_42558.2	3219	8e-25	3041 - 3100	100	60 / 60	plus
JLOC1	JLOC1_42558.1	3578	8e-25	3400 - 3459	100	60 / 60	plus
Harvest21	ABC22235	600	3e-25	54 - 113	100	60 / 60	minus	ABC22235
Harvest35	U35_9582	600	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (600 bp)

>U35_9582 600 Hv_44K_v2
GGCCAACGTGTCGCGGCGGGACGAGCCGGTGGCCGACGCGGCATGGAGGCTGGTGAAAGG
CTGGCTGTCCGACGACGAGGCGAGCAACAACGGGCTGCCGGGCAACGTGGGCGTCGCGGC
GGACCGTGTCGTCGGCGAGGAGATCGAGGGCAGGGGGTGGTCCGAAATGCTGCGGCTGGA
GGTGGACGACATGACCAAGCAGATATGCGGGGATGTCCTGGGCGAGGTCGTTGAGGAGGC
GCTTTCGGAATTCCCCCGGGTACCGTTGATGGATGCTCCTTGAATTCTTCTGCCCTGCTC
GCTCGTGGTGTCCACCGGTGGCTTTTATTTTCCGATCTGGTGGAGACCGTTTGCTGAGGC
CCCGGCGCTCGGCTCCTTGCGTGTGTGTGTGTGTGTGTGTATACTCCGTCCGTAGTCCCC
CTCTTGACTGTTGTCCTGTCTGCTCCAGTCAAGTGTGCGTGCGTGCGTGCCCACTCCCTC
TCTCTGTCACGCCACATGCCGTCACAGTTGATACGTACATTCTATTCTACACTAATAATG
ATCATGAAATGAATGAGCGAGTGAATGAATGAATACAGCTGCGTTTCAGCNNAAAAAAAA

Homology of Contig U35_9582 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None