barSeed - Barley Seed Development Database

Probe CUST_10970_PI390587928

Source Contig U35_9596

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10970_PI390587928	Hv_44K_v2	TGTACTGGGTACATGAGTTCTAGCTGTAGCTTTTCCATCACAAATTTTACCCTGCGCAAG	523	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.798	1.619	1.026	0.784	0.330	0.332
Raw	360.672	494.371	283.246	342.172	50.601	55.625

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32627.1	2785	2e-24	2703 - 2762	100	60 / 60	plus	ABC19513
JLOC1	JLOC1_21247.1	2648	8e-25	2532 - 2591	100	60 / 60	plus
Harvest21	ABC19513	632	3e-25	524 - 583	100	60 / 60	plus	ABC19513
Harvest35	U35_9596	632	3e-25	524 - 583	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_9596 632 Hv_44K_v2
GCTTGGGCTATACAATAGATGCTGCAAAGTGCGGTAATGTTGGAAGATTCATCAACCATA
GCTGCTCTCCAAACATGCATGCACAGGATGTTCTGTGGGACCATGATGACAAGAAGATGC
CGCATGTTATGCTTTTTGCTGAAAAGAATATCCGTCCGCTACAAGAGCTTACTTACGATT
ATAATTATAACATAGGTAATGTGCGTAAGAATGGCAAGGTGAAGGAGAAGAAATGCTTTT
GTGGTTCGTCGAAGTGCCGCCTCAGACTTTACTAAGGTATTGGTGACTGGTGATGGTAAT
GTTCATTATTCAGCGGAGTGCAGTCCTGTCAGCGCAGTGCTCCTTGGTTTTACTCTCCCG
GCCACCTTGCAGTTGTCGATGACTTGTGATGTTGTTTTTCTTGGTACCCTAGCGTTGAAT
TAGTACTGCTTTTTAAAGAGCTGCATTAACTCTTTCTTTTTTTCTTGTGTGCCAGACTCA
AAGAGTTGTATTCTGCTGTTAGTTTTATTTTCAGAACCGAACCTGTACTGGGTACATGAG
TTCTAGCTGTAGCTTTTCCATCACAAATTTTACCCTGCGCAAGCGGGAGCTACGTGCATT
GGGCTGCCCTTTTAACCNAAAAAAAAAAAAAA

Homology of Contig U35_9596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g28460.1	969	4e-52
Arabidopsis v10	None