barSeed - Barley Seed Development Database

Probe CUST_10962_PI390587928

Source Contig U35_14604

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10962_PI390587928	Hv_44K_v2	CGCTGTTTTCTTCTTGCATACATGCTTCCGTGTAATAATGTAACTGAATAATACTATCTG	118	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.317	0.841	1.091	0.909	1.562	1.842
Raw	31677.817	113623.166	141443.400	157734.333	106215.766	141871.666

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19160.1	516	2e-23	109 - 166	100	58 / 58	minus	ABC00051 ABC00255 ABC00507 ABC43663 ABC48315 ABC52587
JLOC1	JLOC1_13290.1	606	1e-23	375 - 432	100	58 / 58	plus
Harvest21	ABC29714	190	4e-24	121 - 178	100	58 / 58	plus	ABC29714
Harvest21	ABC00255	542	4e-24	451 - 508	100	58 / 58	plus	ABC00255
Harvest21	ABC00049	130	4e-24	52 - 109	100	58 / 58	plus	ABC00049
Harvest21	ABC29713	203	1e-23	120 - 178	98	58 / 59	plus
Harvest21	ABC43663	380	2e-22	291 - 348	98	57 / 58	plus	ABC43663
Harvest35	U35_14604	202	3e-25	119 - 178	100	60 / 60	plus
Harvest35	U35_14606	417	4e-24	326 - 383	100	58 / 58	plus

Contig Sequence (202 bp)

>U35_14604 202 Hv_44K_v2
GCACGCACCCAACACCTGCCAGCCACTGCGAGAGCGAGGAGCCTAGCTAGACGACGGCCA
TGGCGATGAGGAAGGATCCACTACTCCTTGTGGCCATGATGCTGGCGCTGGTGGTGGCCG
CTGTTTTCTTCTTGCATACATGCTTCCGTGTAATAATGTAACTGAATAATACTATCTGTG
TGAAAAAAAAAAAAAAAGGGCG

Homology of Contig U35_14604 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None