barSeed - Barley Seed Development Database

Probe CUST_10812_PI390587928

Source Contig U35_14265

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10812_PI390587928	Hv_44K_v2	GCTGTACTTGTAATATCACCCATGCGTGTTATTTTAAAACATGGCAAAACATACTACTAG	1027	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.165	4.586	1.280	0.691	0.216	0.291
Raw	1318.468	1967.973	443.607	411.591	40.268	60.779

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44755.2	1072	2e-24	986 - 1045	100	60 / 60	plus	ABC02300 ABC46979 ABC53005
MLOC	MLOC_44757.1	3468	2e-24	1313 - 1372	100	60 / 60	plus	ABC02300 ABC24776 ABC46979 ABC53005
MLOC	MLOC_44757.2	3398	2e-24	1313 - 1372	100	60 / 60	plus	ABC02300 ABC24776 ABC46979 ABC53005
MLOC	MLOC_44755.1	2573	2e-24	1322 - 1381	100	60 / 60	plus	ABC02300 ABC24776 ABC46979 ABC53005
MLOC	MLOC_44757.3	3353	2e-24	981 - 1040	100	60 / 60	plus	ABC02300 ABC24776 ABC46979 ABC53005
JLOC1	JLOC1_29028.1	3255	8e-25	2027 - 2086	100	60 / 60	minus
JLOC1	JLOC1_29027.1	2713	8e-25	1124 - 1183	100	60 / 60	plus
Harvest21	ABC02299	1064	3e-25	977 - 1036	100	60 / 60	plus
Harvest21	ABC02300	799	5e-23	36 - 91	100	56 / 56	minus	ABC02300
Harvest21	ABC53005	939	6e-22	862 - 922	97	59 / 61	plus	ABC53005
Harvest35	U35_14265	1118	3e-25	1028 - 1087	100	60 / 60	plus

Contig Sequence (1118 bp)

>U35_14265 1118 Hv_44K_v2
TCGAGCACTGTTGGCCTACCGGCAAGCGCAGGTGCGGAGAGGCAGAACCACCACACACAC
ACGCGCGCACTCTCACTCTCCTGCCGTACGCGCTCTCTAGTCAGGAGTAGCAGAAGATGT
CGTCGGTCAGTGCCCGCGCTCCCGTGGCCGCTCTCCGGCCGGCGGCGTCAGCGTCGAGCC
CCCGGTTCCTGGGCGACTCCGGCCGCGTCGGGCTCGCCAAGTCCACCCGCCGCGACGTCG
CCGTCCAGGCCAAGGGGTCCTGGCTCCCCGGCCTCCAGTCCCCTGCCTACCTCGACGGCA
GTCTGGCGGGTGACAATGGTTTTGACCCGCTGGCGCTGGCGGAGGACCCGGAGGACCTGC
GGTGGTTCGTGCAGGCGGAGCTGGTGAACGGGCGGTGGGCGATGCTGGGGGTGGCGGGGA
TGCTGATCCCGGAGGTGCTGACCAAGGCGGGGCTGCTGAACGCGCCCGAGTGGTACGACG
CCGGCAAGGAGACCTACTTCGCCTCCTCCTCCACGCTCTTCGTCATCGAGTTCATCCTCT
TCCACTACGTCGAGATCCGGCGGTGGCAGGACATCAAGAACCCGGGCTCCGTCAACCAGG
ACCCCATCTTCAAGAGCTACAGCCTCCCGCCCCACGAGTGCGGCTACCCCGGCAGCGTCT
TCAACCCCCTCAACTTCGCCCCCACCCTCGAGAACAAGGAGAAGGAGCTCGCCAACGGGA
GACTGGCCATGCTGGCGTTCCTGGGGTTCCTGGTGCAGCACAACGTGACCGGGAAGGGGC
CGTTCGAGAACCTGCAGCAGCACCTGGCCGACCCATGGCACAACACCATCATCCAGACCA
TCTCCGGCCAATAAATCCGTCGATTTCACCGACCAAGGAGGTTTCAGGTGGTCTGAATTA
TTATTTTGGGGTGCTGAGGATGTACAAAGTGTGGAGGAGTAGGTGGCAGTGCAAAAACGT
GTTGTAATCTTAAAGTTCCGGTGGTGAAACTTTGTCCTTGTGGATTCGCCCATGGCTTCC
GACGGAGGCTGTACTTGTAATATCACCCATGCGTGTTATTTTAAAACATGGCAAAACATA
CTACTAGTTTGAAGCATTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14265 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g33820.1	245	4e-137	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g30060.2	247	3e-150
Arabidopsis v10	AT3G47470.1	251	3e-125	\| Symbols: LHCA4, CAB4 \| light-harvesting chlorophyll-protein complex I subunit A4 \| chr3:17493622-17494773 REVERSE LENGTH=251