barSeed - Barley Seed Development Database

Probe CUST_10783_PI390587928

Source Contig U35_5628

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10783_PI390587928	Hv_44K_v2	TGAATGTGTTCTGATACACATCCCTGCCATGTCCACTGTCTACTCTTCAATGCATAAATA	927	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.654	1.541	1.173	0.871	0.359	0.279
Raw	5245.050	7718.297	5146.183	5938.743	862.052	729.980

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77105.2	1005	2e-24	808 - 867	100	60 / 60	plus	ABC12434
JLOC1	JLOC1_51427.1	1012	8e-25	815 - 874	100	60 / 60	plus
Harvest21	ABC12434	987	3e-25	928 - 987	100	60 / 60	plus	ABC12434
Harvest35	U35_5628	987	3e-25	928 - 987	100	60 / 60	plus

Contig Sequence (987 bp)

>U35_5628 987 Hv_44K_v2
CTTCCCGACCCGCTCGTCCGACGACGAGGAGCACTACGAGGACGAGGAGGACGGGAGCGG
GGACGAGTGGGGCGGAGGACGACGAGGAGACGCCCGCCGCGAAGCCGCCCAGCGGGAAGA
CGGAGGAGGAGAAGCTGGCGGAGGCGGACGAGATCGGGTACAAGGTGGTCGGCCCGCTCG
GCGCCGACGAGAAGCCCTTCAAGCCCTACGAGCCCGTCTTCGCCGTCGTCCAGATTGGTT
CGCATCAGTTCAAGGTGAGCAACGGCGACTCCATCTTCACGGAGAGGCTCAAGTTCTGCG
ATGTGAATGACAAGTTAGTTTTAAATCGAGTTCTCATGCTTGGCTCACAAGCCCAAACAA
TAATTGGGAGGCCAACTCTTACTGATGCTACTGTTCATGCTGTCGTCGAAGAGCATGCTC
TAGATGCAAAAGTTATTATATTCAAGAAGAAAAGGAGGAAAAATTACCGCCGAACAAGGG
GACACCGTCAGGAATTGACAAAGCTGAGGATAACCAACATCGAAGGAATAGACAAGTCCT
TTATTCAACAAGAAGGAACAGATAAGCCAGAGAGTGTCGCTGTTGCTGCTTAAATTAAGA
CGATGAATCAAGGAAGGTTGCTGTTTTGTGTTCATGTCGACAATACCAAGCGATCCTTGA
TGCTGGTGTTGCACATTCCTCGATCAATTCTAGATACGCGTCTGTTGCTTTTGTTCTCCT
TAACTAATTCAAAGATTTGAGTCGAAGCTGAAGGCCCTGTTTCTGTATCGTCATTTTAAC
GCACAAGCCTCTCGAGCTATGCCTCTCATGTAATCAGCTCCAGTGTCTTGATAAGTTTAG
AATCTGGATACCCTGGTGTGGATCAGCTCCTGTAGTTTATAGAGCTACACTGATTTTCCA
TTTCTTGTTTCCTTCACCATACGCTGTTGAATGTGTTCTGATACACATCCCTGCCATGTC
CACTGTCTACTCTTCAATGCATAAATA

Homology of Contig U35_5628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48410.1	251	4e-82	protein\|50S ribosomal protein L21, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g16970.3	263	1e-95
Arabidopsis v10	AT4G30930.1	270	7e-59	\| Symbols: NFD1 \| Ribosomal protein L21 \| chr4:15050170-15051630 REVERSE LENGTH=270