barSeed - Barley Seed Development Database

Probe CUST_10764_PI390587928

Source Contig U35_5647

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10764_PI390587928	Hv_44K_v2	CTCAACATAGAGAATGCCACTCAATGAACTTTTGCAGCATGAACTTCTACGTATTAAATT	1684	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68655.1	2411	2e-24	2328 - 2387	100	60 / 60	plus	ABC13289
MLOC	MLOC_68655.3	2291	2e-24	2220 - 2279	100	60 / 60	plus	ABC13289
MLOC	MLOC_68655.2	2464	2e-24	2380 - 2439	100	60 / 60	plus	ABC13289
JLOC1	JLOC1_45437.1	2314	8e-25	2123 - 2182	100	60 / 60	plus
Harvest21	ABC13289	1769	3e-25	1685 - 1744	100	60 / 60	plus	ABC13289
Harvest35	U35_5647	1847	3e-25	1685 - 1744	100	60 / 60	plus

Contig Sequence (1847 bp)

>U35_5647 1847 Hv_44K_v2
GGTTTCGGAGGGCGGCAACGCAAACCCATCTCCCCCAAATCCATCCCGCGGGAGAACCAG
GCGGGCGGGCGGGCGAGCGAGAGAGGCCGGTGCCGGTGCCGGTGCGATGAGGATTGACGA
TCCACTCGACTTCGAGGGGGAGGACGACCCCCTCCTCACCGTCCGCCGCCCCGCCAAGAG
GAAGAAGGTTATTGGGTTGGATGATCTCTTACAAGATTACTTTGATTCCGGGAAGGATGA
GCTCAAAGCTTCTGCTGCTAAGTCTAAGGGTCGCCCCAAAGGAGACAATTCAGACGATGA
AGACAAGAAGATCAGGGAGAAGGAGATTGACTTCTGCAAATTTGTGGATGAGTGTGAGGA
AAAGGCGAAAGTGATGGATCCTGGAGAGGATGTACCCCAATGGGGACAGCGAGTTTTCGG
CTGTCAGAAATTACCCTCAATTCTTGGTGGCACGGGAGTTGAAAAATGCCAACTTTTGCA
ATCATTCGGTGGAGATGAGCAGTTAGGTTTTGATCTAGAAATTGAACAAGGAGAGGCCTT
TTTAGAAGGCATGCTGATGAATGGATGGCTTATGAAGTTGGTAGCCTTATATGGTTCTGT
TGAAGACTCTATAGCATCATGGGCGCTAACCGCATTGCTGTACTCATCCAATAAGAAGTT
ACAAGATTCTGCATCTGAATTTTGGGATAGTCTCCTTTCCCTAAATGAGGATGATAAACC
ATCCGTAAACTTTGGATACTTTCCAAGCTATTCTATTCTAAAGGATGCTGTACTTAATTA
TGGATACCTACATGATGCTCCTTGGTCTAAAACTTGCACCTCTGAAATCGCGGTTGCAGA
TGGCCCACCTCAAAACATCACCGCATGGTTAAGAGTTGTATCCGCTTGCTGCAAAATTAG
AAAACTGCATTCTGTCTTTTCACCTTCGGAAGCAGAAGATGTCCTTGTTATTGTTATTTC
CCTCTTTTTGGACCGTCGACTTGAAGGGCTGCCACTTATTTTGGGAGATTGCCTGAATTC
ACTCATCTCGTACTTCAATACGAGTGAATGGGAAAGTAGCTGTCTGATGGTTGCTGAGTC
GATTTCTAAGAGGGTCAACATGGATCTTAATTGTCTAAGGATTGTTGACTGCATTACCGG
AACCAACGACCGTAGCAAATTCCTAAGGAGCCAGCTGGCCCTTCAGTTGCTCAAAAATAG
CTTCGGCCTTAAAGTGGTGAATGTTGAAAGGATCCTGAAGTCAGTCACATCGATAAATGT
GAAGGAGAAAGAATGCAGCTTCTTCATGCTGTACGTGCACATAGTCTTGATGGACAACCT
GCTCTTCTCGAGCGACGCTTTCAGAAACAAGATCGCGATAATCGACGCTTGGCGCAATTT
TCTACGGAACTGTTCGACCCAGATAGGATGCACGGACTGGAGGTTCTACGCTTCCAAGGT
CCGAAACAAGGCGTCGTATCTCCTGCAAGGTGCAATGCTGAAAAGGCCTGCCGGCAGTGG
TAGCATTCCTGCCAACTGATTTGAACCAGCCTACTGAAGTGCTGCTGCTGGAGGGCACGG
AACCTAGACTCTGATTTACTGGCACAAGTGGTGTGTCAGGGTGAATTGTAGGCGCATTTT
GGGTAACTGATGGTGGCTGACAGTATTCTCAGCCCATGTATAGCAGTCCCCAGCACTGTC
AAGTCTCAACATAGAGAATGCCACTCAATGAACTTTTGCAGCATGAACTTCTACGTATTA
AATTAAATATACATTATGTAGATTTGCTAGTCATATCTGTAATCTCTTTGTTTACAAATA
TTAGATTTTCTATATATTTTAATTTGGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5647 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g13940.1	470	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g08380.1	439	0.0
Arabidopsis v10	AT2G28130.1	458	3e-105	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr2:11988823-11991397 FORWARD LENGTH=458