barSeed - Barley Seed Development Database

Probe CUST_10688_PI390587928

Source Contig U35_18522

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10688_PI390587928	Hv_44K_v2	GGAGCAGGATGTCTCTGCTTCCAAGTCGAATGTAATACTAATAGTATAAGAAAGAAAAAA	2018	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.705	1.166	1.209	1.475	0.667	0.801
Raw	375.916	440.643	385.830	730.486	117.597	152.687

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12233.1	2402	2e-24	25 - 84	100	60 / 60	minus	ABC10369
JLOC1	JLOC1_8202.2	2394	8e-25	2248 - 2307	100	60 / 60	plus
JLOC1	JLOC1_8202.1	1884	8e-25	1738 - 1797	100	60 / 60	plus
Harvest21	ABC10369	2082	3e-25	1996 - 2055	100	60 / 60	plus	ABC10369
Harvest35	U35_18522	2105	3e-25	2019 - 2078	100	60 / 60	plus

Contig Sequence (2105 bp)

>U35_18522 2105 Hv_44K_v2
AGCTCCCCCCAGTCCCCCACCCAGCTCGCTCCACACTGCCCGGCCCGCAGCCCCTGGCGC
GCTAGCTTGCTCTAGCTAGGCCAGCAAGGTCGCGCGCGCGCCATTAATCTTCCTCGCCCG
CGGCATTGCCTCGTCCCGGCCGGCGGCGAGGGGATCCAGCTTTGGCCAAGGGCTTAGCAG
GCGAGCGATGGACGCGGCGGTGGGGCTGCCGGACGCGTGGTCGCAGGTGCGGGCGCCGGT
GATCGTGCCGCTGCTGAAGCTGGCCGTGGCGGTGTGCCTGCTCATGTCGGTGCTGCTCTT
CCTCGAGCGGCTCTACATGGCGGTGGTCATCGTCGGGGTGAAGCTCCTCGGCCGCCGCCC
GGAGCGGCGGTACAAATGCGACCCCATCTCCGAGGACGACGACCCGGAGCTCGGCAGCGC
CGCCTTCCCCGTCGTGCTCGTCCAGATCCCCATGTTCAACGAGCGGGAGGTGTATCAGCT
GTCGATCGGCGCGGTGTGCGGGCTGTCGTGGCCGTCGGATCGGTTGGTGGTGCAAGTGCT
GGACGACTCCACGGACCCCCTCATCAAGGAAATGGTTCGGATGGAGTGCGAGCGGTGGGC
GCACAAGGGGATCAACATCACGTACCAGATCCGGGAGGACCGCAAGGGGTACAAGGCCGG
CGCGCTCAAGGCGGGGATGAAGCACGGGTACGTGCGCGAGTGCGAGTACATGGTCATCTT
CGACGCCGACTTCCAGCCGGACCCCGACTTCCTCCACCGCACCATCCCCTACCTCCACCA
CAACCCGGAGATCGCCCTCGTCCAGGCGCGACGGAGGTTTGTGAACGCCGATGAATGCTT
GATGACGAGGATGCAGGAGATGTCCTTGGATTACCACTTCAAAGTGGAGCAGGAAGTGAG
CTCCTCCGTCTGCGCCTTCTTCGGCTTCAACGGAACCGCCGGTGTGTGGCGCATTTCTGC
AGTGAATGAAGCAGGGGGCTGGAAGGACCGGACCACCGTGGAGGACATGGATCTGGCTAT
CCGGGCCAGCCTCAAGGGATGGAAGTTTGTCTACCTCGGCGATGTTCAGGTTAAGAGTGA
ACTCCCCAGCACTTTCAAAGCCTTCCGGTTTCAGCAGCACAGATGGTCTTGTGGTCCGGC
AAACCTGTTCAGGAAGATGCTGTTGGAGATTGTGACAAACAAGAAAGTGACAATCTGGAA
GAAATTCCATGTCATCTACAACTTCTTCTTGGTGCGCAAGATCGTCGCCCACATTGTGAC
ATTCACCTTCTACTGCATAATCATCCCGACAACCATCTTTGTCCCTGAGGTTCATATACC
AAAGTGGGGTTGCGTCTACATTCCAACCATCATCACCCTCCTCAATTCTGTTGGAACTCC
CAGGTCTTTCCACTTGCTTTTCTTCTGGATCCTCTTCGAAAACGTCATGTCGCTGCATAG
AACCAAGGCCACATTGATTGGCTTGTTAGAGGCAGGCAGGGCGAATGAATGGGTCGTCAC
GGAGAAGCTCGGCAGCGCCATGAAGATGAAATCCGCTAACAAAGCATCAGCCAGGAAGTC
ATTCATGAGGATGTGGGAGAGGTTAAACGTTCCGGAGCTCGGCGTGGGAGCCTTCCTCTT
CTCATGTGGATGGTACGATGTCGCGTTCGGGAAGGACAATTTCTTCATATACCTTTTCTT
CCAGTCGATGGCTTTCTTCGTCGTCGGGGTTGGCTACGTTGGCACAATCGTCCCACCGTC
ATAACTGAAAGAACGTCGGGATCATGCGCTCTGCAGTTCACAGTTCCCTGAGAAATCAGC
AAAAGATTAGTTGGCCGTGCATAGCCAGTTTAAAAGTAAAGATCACGCAGTCTTCTCGGG
GTTTCTCTCTGTTTTCCTTCCTCTTTGGAGACTGATAGTATTGCAGCATTCCCTTGAATG
TGCTATTGTAAAAGAAAGCCAAGTGCGGTGTAAGGTCACTGCATGTGTATTTGTGGTGTT
CTCTTTTTGCTTGTAGCAAGTACGTGCCGTGATTATGGGGAGCAGGATGTCTCTGCTTCC
AAGTCGAATGTAATACTAATAGTATAAGAAAGAAAAAAAGGTTCAGGCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_18522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g09930.1	522	protein\|CSLA1 - cellulose synthase-like family A; mannan synthase, expressed
Brachypodium v1_2	Bradi3g06740.1	519
Arabidopsis v10	AT5G22740.1	534	\| Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 \| cellulose synthase-like A02 \| chr5:7555379-7559866 REVERSE LENGTH=534