barSeed - Barley Seed Development Database

Probe CUST_10656_PI390587928

Source Contig U35_44801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10656_PI390587928	Hv_44K_v2	AGCTCTGCTGTCGCCTCGCTTGTAGGTGGGCTTTAAACTTCAGTTACTAGATGCAAAAAA	11	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.372	1.347	1.271	0.832	0.291	0.258
Raw	4790.540	7473.820	6072.447	6231.697	764.832	747.285

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC42958	620	3e-25	12 - 71	100	60 / 60	minus	ABC42958
Harvest21	ABC14419	973	8e-21	710 - 764	98	54 / 55	plus	ABC14419
Harvest35	U35_44801	620	3e-25	12 - 71	100	60 / 60	minus
Harvest35	U35_19536	973	8e-21	710 - 764	98	54 / 55	plus

Contig Sequence (620 bp)

>U35_44801 620 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCATCTAGTAACTGAAGTTTAAAGCCCACCTACAAGCGAGGCG
ACAGCAGAGCTCCCAGTAGTTTGAAATGCAAATACCTTATATGAGAAAAGATCTATCTTA
TGTCCTGAACCGAAGGAACTGCTAGTAACTGCTAGAGTCAGGCGGCCACAAGCACATGAA
GAAACACGAACGTCAGGTAGATTTCAAGTGAAAGAAGAAAACAATGACTTATCACCCGCT
TACAGGCAACAACATACTGTCCCAAGCAGGCATTGAGTTACGCTTTCATCTCGGCGAGTG
CGAGCTGGAAGGCGTCCGCCTCGACCTTCTCCCACTCCTCCTTGGCATCACCCTTGGCAG
AATTCTTCATTGCCATGCCGAGCTCCTTGGCATGCTTCACCTTCCTGCTCTTGACCAGCC
CTTAGATCAGATCCTTGACAGCCTGGAACGGCGGCGCCCACTTGTTGGAGTGCAGTGACA
AACGCGTTGTTTTTGACCAGCGCCTCGATCAGGATGATGTAGGTCTCGAAGTTGGGCGAC
ACGCCTTTCCCATTGGGCCTTGGCACCTCCGGCATCCTCTTGAACATCGCCACTGCAGCG
CCTACCTCCCCCTCATTGCA

Homology of Contig U35_44801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None