barSeed - Barley Seed Development Database

Probe CUST_10645_PI390587928

Source Contig U35_20855

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10645_PI390587928	Hv_44K_v2	TGCTAGGGAAGTAGAAATGCAGATCGGTTGGACTTGGATTCATGCTACTTTCCGTCCTTA	553	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.797	2.640	1.200	0.747	0.391	0.440
Raw	2191.203	3140.913	1281.057	1243.972	233.843	284.641

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_1997.1	2959	8e-25	2826 - 2885	100	60 / 60	plus
Harvest21	ABC14481	775	3e-25	711 - 770	100	60 / 60	plus	ABC14481
Harvest35	U35_20855	618	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_20855 618 Hv_44K_v2
GAAGGTTGATGCTATGCTTCAGGGATTAGAAAAGGAGATAGATGATGTCGATGCACAAAT
CGGAAACCGCTGGCAACTGCTTGATAGGGATCATGATGGCAAGGTCACTCCTGAGGAGGT
AGCGGCGGCAGCAGCTTATCTCAAGGATACCATAGGGAAGGAAGGTGTCCAAGAGCTCAT
CAGCAATCTTTCTAAAGACAAAGAAGGAAAGATCCTTGTGGAAGACATCGTGAAGCTGGC
TTCTCAAACTGACGAAAACAATGAGGACCAAGAGGAAGAATCACGGCAGTAGTTGCGAAC
ACGCTTGAAAATTCATTTTCCGTGTTGAGATGGACAACCTATTATTTCAGATGAGTATTA
GCCATTCGAGTATCAGAGCTACGTCATGGCAGTGCCGTGTGTAGATCAAAAGGCAGGACA
TCCATTTTTTGTGCCTCTCCGGGCTGACTTGGAATGTAACGATCAGTGACTTGCAAGGCA
AACTTGCTGTGGGATGCATATAAGTTCAGTGCTGTGGATCGGCTGTTAAATGGCGACCGT
GATTTCGACAGGTTGCTAGGGAAGTAGAAATGCAGATCGGTTGGACTTGGATTCATGCTA
CTTTCCGTCCTTAGCTTT

Homology of Contig U35_20855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None