barSeed - Barley Seed Development Database

Probe CUST_10595_PI390587928

Source Contig U35_58

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10595_PI390587928	Hv_44K_v2	TATTGGCATTCCTGCTAACAACAAGGGGAAGCAGAGCATTGGTTGCCTATTTTGGCTTCT	1	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.601	0.651	1.614	2.182	0.935	1.084
Raw	2906.027	4987.963	10745.330	23467.307	3497.503	4403.920

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55662.1	1410	2e-24	675 - 734	100	60 / 60	minus	ABC01919 ABC01922 ABC43138
JLOC1	JLOC1_35938.1	1544	8e-25	661 - 720	100	60 / 60	plus
Harvest21	ABC51502	577	3e-25	265 - 324	100	60 / 60	plus
Harvest21	ABC01919	1399	3e-25	574 - 633	100	60 / 60	plus	ABC01919
Harvest35	U35_465	1395	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_58	626	3e-25	2 - 61	100	60 / 60	minus

Contig Sequence (626 bp)

>U35_58 626 Hv_44K_v2
GAGAAGCCAAAATAGGCAACCAATGCTCTGCTTCCCCTTGTTGTTAGCAGGAATGCCAAT
ATCAACGTAACGCATCGGAGAGTCAGTGTCGCAGAAGGCAATGGTGGGAATGTTTCCAAG
TGCAGACTCCTTAATAGGCTGGTGAACAAAGCCTCGTGGTGCTGGAGAAGGCCGTCGCCG
CCGCCGTCGCCAGGGAAGGGGATGCCGTCTGTGGTTGGGGGACGGAGGAGCAGGCGAGGG
CGATCATACGCGCGGCCAAGATGGCGCTCGAGGAGGCCGCCGCCATGGGGGAGTCCCCGT
CGCTCCTGAGGTCGCTGGAGCGGTTCCTCGCGCAGAGGAGATCGGACCAGACGACCATGC
CGCCGGCGCCGGCGGTGGACGTCCAACCGGACGGCGGGGATTCCACCGTCTCCGCGGCCT
TGCAAGATCTGGCAATTAACTAGGGTAGGAATAGGATAGCCGTTCCTTGAAGGAAAAGTT
ATTCCTGGAATTCGATGTCTATTTTCAGCTCATCTAATTTGTTCCTTCTTCCAATTTCGT
TGTAGCGCAACTTTCGAGTATTTTCGTTTTCTACCGTCGTCAGAGATTCTGCCATATTGT
TGTTGCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_58 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None