barSeed - Barley Seed Development Database

Probe CUST_10581_PI390587928

Source Contig U35_19330

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10581_PI390587928	Hv_44K_v2	GCCCCTGCTAATCTCTCTTTGCATGTATTATTGGCACTAATTAACTTTGATGAGATAGCA	1095	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47608.1	883	2e-24	176 - 235	100	60 / 60	plus	ABC10826
MLOC	MLOC_47608.2	1387	2e-24	176 - 235	100	60 / 60	plus	ABC10826
JLOC1	JLOC1_30677.1	1387	8e-25	176 - 235	100	60 / 60	plus
Harvest21	ABC10825	1170	3e-25	1097 - 1156	100	60 / 60	plus
Harvest35	U35_19330	1169	3e-25	1096 - 1155	100	60 / 60	plus

Contig Sequence (1169 bp)

>U35_19330 1169 Hv_44K_v2
CCAGCACCGACGAGGTGAGGGGCGGCGCGATGGCATCGTGGGGCGGCATTCCGGTGAGGC
AGGGACAACCGTGGGGCTCGACTCGCCCTCCGGCTCCGGCTCCGGCACCGCGTCCAGGGC
ACGGAGCGGGGCCGAGGAGAGGCCCGCCTTCGGGGAACGCACCAGCTCTGGCTTCGCGTC
CAGGGAGCGGCGGAGCGGCGGCGAGAGCGGGCCCGGGGAGAGGCCCGTCTTCGGGGACAG
CACCAGCTCCGAGCGGAGGAAGCTCGGCCAAGAGTTCTACAAGGATATCTTCCGGGGGGC
GAGCCCACGTCGCCCGGCGGATCCACCAGCCGCATGCTGTCGCGGTCCACGTATTTGGTT
CACTTCTCCATGAAGTTCACCACAGGTGTGGACAGTTCAGTGCCTACTTCTCCATCCCGG
CATATATCCAACAGAAATGATGATGACACATCTTATGGTTACAGTGTTCCAGTTTCACCG
AATTCATCCACGAACAGTTCTTTTGCACAAGGGGTATCCCAGCAAGATTCGAAGAAGAAT
CCCTTTTTGTGGCATCGATATCCCTTCCTATCCCGGTTCCGTTCAAGTGGAGATAAGAAG
GAGAAGGACACTTCTCAACGTGTTAACTCTATGGACAGTGAATGTGAAGGGACTCCTATT
AGCTCAGCAAGCTTCATCAGCAGCGACAAGTTCCATTTTTCATTCTATAAGTGGGCAGGG
CAAGACAAAGAAGGAGCACGACGGCAGGGTGATTTGAGGCTCGTGGTGGACCAGCTCAAG
CGAGGGGAAGGTCGGATTCATCGGCTGACGGCGTCGGCAAGGGGTTCAACGGCGGCCAGA
GGTAACTCGCAACTCTTCAGACTTTGATGGATAACAGGTCAACATCCGATAGTGCTCCAC
TGTTTGCCGGAAGTCCGTCGGTGGGTTCTACACTTGACGTATGTGGACAAGGAGGCTTCA
AATCATGGTCTTTGATTCTCTGGCAACCTGTTGTTCATTGCGTCAAATATCTCTGCAACC
TCTCTTCCTTCCAACTTGCTTTGAGTGCTTGGCTACATCTCAATTTGATCTGATCTATTT
TTCTTTTACTACTTGGCCCCTGCTAATCTCTCTTTGCATGTATTATTGGCACTAATTAAC
TTTGATGAGATAGCAATGTTTCTTACTGG

Homology of Contig U35_19330 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None