barSeed - Barley Seed Development Database

Probe CUST_10580_PI390587928

Source Contig U35_19331

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10580_PI390587928	Hv_44K_v2	GTTCCTTCAAACTGCGCTCTTCAATCTTGAGTGGACAATTATATGTTTCCCTTATAGAAA	959	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357484	1135	3e-22	1051 - 1109	98	59 / 60	plus	ABC10826 ABC14412
MLOC	MLOC_48121.1	709	3e-22	442 - 500	98	59 / 60	plus	ABC10826
JLOC1	JLOC1_30937.1	606	1e-22	458 - 516	98	59 / 60	plus
Harvest21	ABC10826	1058	3e-25	960 - 1019	100	60 / 60	plus	ABC10826
Harvest35	U35_19331	1058	3e-25	960 - 1019	100	60 / 60	plus

Contig Sequence (1058 bp)

>U35_19331 1058 Hv_44K_v2
GCGGCGCGGTGGCATCGTGGGGCGGCATTCCGGCGAGGCAGGGACAACCATGGGGCTCGA
CTCGCCCTCCGGCTCTGGCTCCGGCACCGCTCCAGGGCGCGGAGCGGGGCCGAGGAGAGG
CCCGCCTTCGGGGACCGCACCAGCTCTGGCTTCGCGTCCAGGGAGCGGCGGAGCGGCGGC
GAGAGCGGGCTCGGGGAGAGGCCCTTCTTCGGGGACCGCACCAGCTCCGAGCGGAGGCAG
CCCGGCCAGGAGTTCTATAAGGATATCTTCCCGGGGGCGAGCCCACGTCGCCCGGCGGGT
CCACCAGCCGCCTGTTGTCGCGGTCCAGCTTCTCCATGAAGTTCACCAGAGTTCTTTTGC
ACAGGGGGTATCCCAGCAAGATTCGAAGAAGAATCCCTTTTTGTGGCATCGATATCCCTT
CCTATCCCGGTTCCGTTCAAGTGGAGATAAGAAGGAGAAAGACACTTCTCAACGTGTTAA
CTCTATGGACAGTGAATGTGAAGGGACTCCTATTAGCTCAGCAAGCTTCATCAGCAGCGA
CAAGTTCCATTTTTCATTCTATAAGTGGGCAGGGCAAGACAAAGAAGGAGCACGGCGGCA
AGGTGATTTGAGGCTCATGGTGGACCGGATCAAGCAAGGGGAAGGTCAGATTCGTCGGCT
GACGGCGTCGGCAAGGGGTTCAATGGCGGCCAGAGGATATGATTATGATGATGATGCATA
CTGCTCCTCTGGAGTCTACGTCTCTTTGGATTCTTGGACACTTATAGCCAATGAGACTAC
ATTTTCGGTTGTTAGCTGGAGCTATCACTATGACTGGAAATTTATTTCCGCTCAAGTAAA
TTTATATGCTCACTGAAAACCAACGACAGTCAACACTTATCAGCAGTTTGCAATTTGTAT
TAGAATGTGCCTAAGCCAATGGTCAGACAATCTTGGTCATGATTTATGTAGATTGGATAG
TTCCTTCAAACTGCGCTCTTCAATCTTGAGTGGACAATTATATGTTTCCCTTATAGAAAA
ATTTACATATATGTTTGCATAAAAAAAATAAAAAAAAA

Homology of Contig U35_19331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None