barSeed - Barley Seed Development Database

Probe CUST_10577_PI390587928

Source Contig U35_19333

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10577_PI390587928	Hv_44K_v2	CAATTGTTTGGGTTACGAACTGCAATATTGTAAAATAAACGCTCCAAGTCCTGCTGCAAA	1166	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18649.1	1601	2e-23	865 - 922	100	58 / 58	plus	ABC12393 ABC17095
JLOC1	JLOC1_12904.1	1155	1e-23	678 - 735	100	58 / 58	minus
JLOC1	JLOC1_12902.1	1623	1e-23	865 - 922	100	58 / 58	plus
Harvest21	ABC12393	1241	3e-25	1168 - 1227	100	60 / 60	plus	ABC12393
Harvest35	U35_19333	1240	3e-25	1167 - 1226	100	60 / 60	plus

Contig Sequence (1240 bp)

>U35_19333 1240 Hv_44K_v2
CTGCAATCCCCAATCTCCCAGTCGCCGGAGCACCCGACCGATCCAACAGCCTCGGTCGTC
GGCGAGGAACCTGCTCCGGTAGGCGGAGATGGGCGGGCACGGTGGTCTCAACATCCTGCC
GCAGAAGCGGTGGAACGTCTACAGGTTCGACAACCAGGAGAAGGTCCGCGTCGACGAAGC
CGAGGCCGCCCGCCAGGACCAGCTCCAGCGCGAGGCCACCCGCCGCCGCGAGTCCCACGC
CCGCCTCGTCGCGCTCCGCCGCAACCGGGGCCTCCAGGCCGACTCGCCCTCCCCTCCCCG
TGCCCCATCTCCGCCCCCCTCCTCCGCCCGGCCCGCGCATCAGGTCGCCCCACGGCGGTC
CCCACCCCCTGCCGCCCGGCCCGCGGAACCATCCCCCGTCGCCTCTGACGGAGACCACAT
CAACCTCTTCTCCGGCGGCGGTGGGGCCGCTGACTTCGCCGCGCTTGCCTCCGCTAGCGG
CGGGAGGGGCGCGGCTCGGGAGAGGGAGCCTGCGGCGGACACCAAGCCAAACCCTAAGAA
GCGTAAGAAGGAGGAGGAGGTTAGGACGGCGGGGCCTGACGACGAGAAGTACAAGCTGGG
TTATGGCCTTGCCGGGAAGGGCGTGGCGGCGCCCTGGTACATGTCGAAGCCTTTGGCTTC
CTCCTCCAAGGAGAGGAGAGATTACGCCGAAGGCACGGGAGAGAAGAGGAGTGGAGGGAA
GAAGAGTATCGAGGAGCTTAGAGAGGAGAGGAGGAAGAGGGAGGCCAAGGAGAAGGAGCG
TGAGCGAGCCTTGCTTGCCCCTACAGCAAGGAAGGAGAGGCAGCCGGATCGTGGGTACTC
GTCGAGGTATGTGCGTCGATGATGCAAGGGTCTGTGTGAAATTATCTGCAGGATCTGCAA
TGGATGTTTATTGGAGAAAACCGAAGATGGGCGTCAAAACTTGCATGAAAATACTTTGAA
AGATTGATGTGGAGGCAAAGAGCCATGTTGCTCTGGTGAACTTTCAAGCAGTTCAAGAAC
ATCTCAGTCAATATGAAGATTCGTTAGAGATTAGTTTGTGTATTATTATTATTATGCTCC
TTCTGTAAGATAAACAAGTGCATTAGTGCAGCGTGCAATCACGCCCTCCGTTCTTGTAAA
TTTTATCAACTCTTACCTGGTGTACACAATTGTTTGGGTTACGAACTGCAATATTGTAAA
ATAAACGCTCCAAGTCCTGCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None