barSeed - Barley Seed Development Database

Probe CUST_10546_PI390587928

Source Contig U35_41526

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10546_PI390587928	Hv_44K_v2	AACTCGAAACAAAGCAACCACGGATCATCATGGATTCATAGCCCATAAGAACCAGCCGTT	78	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.995	0.813	0.720	0.588	1.345	1.198
Raw	3.661	3.368	2.776	3.117	2.765	2.744

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367512	2547	2e-24	129 - 188	100	60 / 60	plus	ABC04470
MLOC	MLOC_11602.1	2301	2e-24	280 - 339	100	60 / 60	plus	None
MLOC	MLOC_11602.2	2137	2e-24	280 - 339	100	60 / 60	plus	None
JLOC1	JLOC1_7695.2	1848	8e-25	212 - 271	100	60 / 60	plus
JLOC1	JLOC1_7695.1	745	8e-25	212 - 271	100	60 / 60	plus
Harvest35	U35_41526	532	3e-25	79 - 138	100	60 / 60	plus

Contig Sequence (532 bp)

>U35_41526 532 Hv_44K_v2
CCAAGACTTGCGATAAGCGTAAACTTAGAGACCCGGAGAGGACTCGGAGGGGCCATAAAA
ATCCAGGATCCTTCCGTGAACTCGAAACAAAGCAACCACGGATCATCATGGATTCATAGC
CCATAAGAACCAGCCGTTGGTTGGCTCGGTTCTCGTCCCTCCCGCGACGTGCTGCCATGG
CGCCCGGGCTCCCTCTCGCCGTCGCCTTCTTCCACCTCTGCCTCCTCCTCTCGTCGTCGT
TGTCATCGTCTTCTGCCCGGATGCTGGTAGCCCCCGATGCGGCGGAGAGCACGGCCCGCA
ATGGCAGCAGGACCGCCTACCACTTCCAGCCCGCCAAGAACTGGATGAACGATCCGAATG
GTCCCATGTACCACAACGGATTGTACCACTTCTTCTACCAGTACAACCCCGACGGCGTGA
CGTGGGGGAACGGCAACCTGTCGTGGGGACACTCCGTCTCCCCTGGACTCGTGAACTGGT
TCGCGCTCGACACAGCGCTTGAGCCCAGCCGGTCGTTCGACGCCCACGGCTG

Homology of Contig U35_41526 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None