barSeed - Barley Seed Development Database

Probe CUST_10541_PI390587928

Source Contig U35_27237

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10541_PI390587928	Hv_44K_v2	ATTCGGCAAGGTCATTTGGACCGTCAAGGAGTACGTGCGCGACGGTGACACCCCATACAT	429	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63013.1	1327	2e-24	761 - 820	100	60 / 60	minus	ABC10713 ABC42036
JLOC1	JLOC1_41267.1	1345	8e-25	476 - 535	100	60 / 60	plus
Harvest21	ABC21751	560	3e-25	430 - 489	100	60 / 60	plus
Harvest35	U35_27237	562	3e-25	430 - 489	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_27237 562 Hv_44K_v2
GAACGTGCAAGCCAGTATCCACTCATCTCATCTGCTGGACTGGTGGTAGTGCCGCCCAAC
AATGTCCAGAGCTGCGCTGCTCCCTGTCGCGGTGCTGCTGTGCCTTGCGCTGGCCGGCGG
CGCCAATGCTGAGCGGAAACCGGTCGGTTTCTACGGGCTCGAGAACAAGAAGGGGGATTT
CTCCATCAAGGTCACCAACTGGGGAGCTACGCTCGTGTCTGCCCTCGTCCCCGATTGCCA
AGGAAACTCGGCTGATGTTATCCTCGGGTACGACACCCTTGCCGGATATGTTAACGGCAC
CGGCTCATTCGGGGCCACGGTCGGCCGCGTGGTGAACAGAATCGCTAAGTCCCGCTTCGT
GCTCGACGGGAAAGCCTATCGTCTCTTCCGTAACGACGGCAATAACTCGATTCACGGTGG
GCACAGGGGATTCGGCAAGGTCATTTGGACCGTCAAGGAGTACGTGCGCGACGGTGACAC
CCCATACATCACCTTCTTCTACCACAGCTTCGACGGAGAGCAAGGATTCCCGGGCGACCT
GGACGTGTACGTGACGTACCAA

Homology of Contig U35_27237 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36600.1	379	2e-72	protein\|aldose 1-epimerase, putative, expressed
Brachypodium v1_2	Bradi5g12250.1	364	3e-90
Arabidopsis v10	None