barSeed - Barley Seed Development Database

Probe CUST_10467_PI390587928

Source Contig U35_39232

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10467_PI390587928	Hv_44K_v2	ATTAACACAGATGGTACTTTGGTCGATGGTCAAATCTCCCCTCATGTATGGAGGGGACTT	532	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4373.2	2228	2e-24	1105 - 1164	100	60 / 60	minus	ABC21521
MLOC	MLOC_4373.5	2055	2e-24	833 - 892	100	60 / 60	minus	ABC21521
MLOC	MLOC_4373.1	3998	2e-24	2771 - 2830	100	60 / 60	minus	ABC21521
JLOC1	JLOC1_2709.3	3985	8e-25	1164 - 1223	100	60 / 60	plus
JLOC1	JLOC1_2709.2	3876	8e-25	1055 - 1114	100	60 / 60	plus
Harvest21	ABC35276	625	3e-25	533 - 592	100	60 / 60	plus
Harvest35	U35_39232	625	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (625 bp)

>U35_39232 625 Hv_44K_v2
GGGACGGCCGGCAATGGACGGCGCGCGACATAGGCATCACCCACAGGACCTGCGCGTGGA
TGTCCAACGGGTTCATGAGCGTGAACACCGACGTGGGGGCCGGACGAGCCTTCCTGAGGT
CTCTTTACCAGCAATACGCCGATTGGGGCGTCGATTTCGTGAAGGTAGATTGCATCTTCG
GCACGGACTACAGCCCCAAGGAGATCGTGGCTGTCTCAGAGACCCTGAAAGAGTTCGAGC
GGCCGGTCATCCTGTCCATCTCCCCCGGAACAGAAGCCACTCCGGCACTAGCCGAGAACA
TCAGCCAGCACGTTGACATGTACAGGATAACGGGGGACGACTGGGACAACTGGAAAGATG
TTCGCCCGCATTTCGACGTCGCCAGATCATTCGCCGATGCGAATAAGATCGGCGCCACCG
CACTGCGAGGAAGGTCTTGGCCTGACTTGGACATGCTTCCATTCGGCAGGCTTACTGATG
CAGGTGTTAACCAGGGCCCTCACAGAAGCACCAACCTTACATTTGACGAACAATTAACAC
AGATGGTACTTTGGTCGATGGTCAAATCTCCCCTCATGTATGGAGGGGACTTGAGGCATC
TCGACGATGAAACATTCAATCTGAT

Homology of Contig U35_39232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g33420.1	650	4e-123	protein\|glycosyl hydrolase family protein 27, putative, expressed
Brachypodium v1_2	Bradi2g13520.2	631	4e-132
Arabidopsis v10	AT3G26380.1	647	5e-97	Melibiase family protein \| chr3:9660140-9663145 FORWARD LENGTH=647