barSeed - Barley Seed Development Database

Probe CUST_10402_PI390587928

Source Contig U35_15768

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10402_PI390587928	Hv_44K_v2	CCGTACTGGTTTCTAGAGTATATCTTGTTTCGAATGAATAAATAAATAACGCGTGCACGT	723	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15151.1	986	2e-24	16 - 75	100	60 / 60	minus	ABC05216 ABC05217 ABC05218
MLOC	MLOC_15151.2	536	2e-24	9 - 68	100	60 / 60	minus	ABC05216 ABC05217 ABC05218
JLOC1	JLOC1_10371.1	989	8e-25	912 - 971	100	60 / 60	plus
Harvest35	U35_15768	783	3e-25	724 - 783	100	60 / 60	plus

Contig Sequence (783 bp)

>U35_15768 783 Hv_44K_v2
CCAAGTCATATCAAAATTTAAACAGCAGAATCTTGTAGCTAGCCGATCGGCAATGGCGAC
CAAGATCTACATCGTGTACTACTCGACATGGGGGCACGTGGCGACGCTGGCGGAGGAGAT
GAAGAGAGGCGCCGACTCCGTGCCGGGCGTGGAGGTCACCGTGTGGCGAGTGGCGGAGAC
GCTGGCGGAGGAGGTGCTGGGGAAGATGCACGCGGCGCCGGGGCGCGAGGACCACCCGGT
GATAACGGCGCAGCAGCTGGCCGAGGCCGACGGCGTCCTGTTCGGCTTCCCGACGCGGTT
CGGCATGATGGCGGCGCAGATGAAGGCCTTCTTCGACTCCACGGGCGGCCTCTGGCAGGC
GCAGTCCCTCGCCGGCAAGCCGGCGGGCGTCTTCTTCGCCACGGGCACGCAGGGCGGCGG
CCAGGAGACCACGGCCCTCACGGCCGTCACGCAGCTCACGCACCACGGCATGCTCTTCGT
GCCCGTCGGCTACACGCACGGCGCCGGCATGTTCGCCGTCGACGAGGTCAAGGGCGGCAG
CCCGTACGGGGCCGGCACCTTCGCCGGCGCCGATGGCAGCAGGACGCCCAGCGACGCCGA
GCTTGCCTTGGCCGCGCACCAGGGGAAGTACTTCGCCGGCGTCGCCAAGAAGCTCAAGGC
CGCCGTCTGAAGTGCGTCGGCGTGTCAACTGGAGCAAAATTTGTTTATTTAGCAATTACT
ACACCGTACTGGTTTCTAGAGTATATCTTGTTTCGAATGAATAAATAAATAACGCGTGCA
CGT

Homology of Contig U35_15768 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g42190.1	206	6e-84	protein\|NADPH-dependent FMN reductase domain containing protein, expressed
Brachypodium v1_2	Bradi1g59450.1	205	2e-101
Arabidopsis v10	AT4G27270.1	205	2e-78	Quinone reductase family protein \| chr4:13661458-13663243 REVERSE LENGTH=205