barSeed - Barley Seed Development Database

Probe CUST_10401_PI390587928

Source Contig U35_15769

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10401_PI390587928	Hv_44K_v2	AAATAGAAGAGAGCTCTTCGGCTAATCAGCAATGGCGACCAAGATCTACATAGTGTACTA	190	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67257.1	1140	2e-24	318 - 377	100	60 / 60	plus	ABC05216 ABC05217 ABC05218
MLOC	MLOC_67257.2	966	7e-23	38 - 94	100	57 / 57	plus	ABC05216 ABC05217 ABC05218
JLOC1	JLOC1_44389.1	1342	8e-25	267 - 326	100	60 / 60	plus
Harvest21	ABC05217	1126	3e-25	191 - 250	100	60 / 60	plus	ABC05217
Harvest35	U35_15769	1044	3e-25	191 - 250	100	60 / 60	plus

Contig Sequence (1044 bp)

>U35_15769 1044 Hv_44K_v2
GTTTTTTTAATTAGCAGAGTCGCTCTTTCTAGGACAGAGGGAGGAGGATTATCTTAACAG
TACTGGATCAGTTCGATGTACTAGTAGCTTACTTAGGGCTTGGCAGCCTTTAATCTTCTC
TATAAATACCAGTGCCTCCGTGTCTTCTTCCTTCACCAGCCATACAGCGAGCAAATTAGA
AACACAGATCAAATAGAAGAGAGCTCTTCGGCTAATCAGCAATGGCGACCAAGATCTACA
TAGTGTACTACTCGACCTGGGGACACGTCGCGACGCTGGCGGAGGAGATGAAGAAGGGCG
CCGACTCCGTCCCTGGCGTGGAGGTCACCATCTGGCGGGTGCCGGAGACGCTGCCAGAGG
AGGTGCTCGGGAAGATGCACGCCGCGCCGGGGCGCGAGGACCACCCCGTGATCACGGCGA
GCCAGCTGGCCGAGGCCGACGGCATCCTGTTCGGCTTTCCGACGCGGTTCGGCATGATGG
CGGCGCAGATGAAGGCCTTCTTCGACTCCACCGGCGGCCTCTGGCAGGCGCAGAGCCTCT
CGGGAAAGCCCGCGGGCGTCTTCTTCGCCACGGGCACCCAGGGCGGCGGGCAGGAGACCA
CGGCCCTCACGGCCGTGACCCAGCTGACGCATCACGGCATGCTGTTCGTGCCGGTCGGGT
ACACGCACGGCGCCGGCATGTTCGCCATGGACGAGGTCAAGGGCGGCAGCCCGTACGGTG
CCGGCACCTTCGCTGGAGCCGATGGCAGCAGGGTGCCCAGCGACGCCGAGCTCGCCCTGG
CGGCGCACCAGGGCAAGTACTTTGCCGGCATTGCCAAGAAGCTCAAAGCTGTCTGAAGTC
CGATCACCGGCCGTGTCCCGTGATTCATATCAATTAGACAGCAACGGGCGCGGTCGAGTG
CGACTGTGCGAGATGATTTGACACATCATTTCCACTGGAGCAGATTTACACAATTATAGA
CAATTCAACTGTACTGCATTTAATTTCTTGTTTGAGAAATAATACAACTAGATGCGTTGT
TGATGTTATAAAAAAAAAAAAAAA

Homology of Contig U35_15769 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g42190.1	206	8e-89	protein\|NADPH-dependent FMN reductase domain containing protein, expressed
Brachypodium v1_2	Bradi1g59450.1	205	2e-111
Arabidopsis v10	AT4G27270.1	205	2e-83	Quinone reductase family protein \| chr4:13661458-13663243 REVERSE LENGTH=205