barSeed - Barley Seed Development Database

Probe CUST_10384_PI390587928

Source Contig U35_15770

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10384_PI390587928	Hv_44K_v2	AGTATGTAATCACGGTGGACCACTTATAAAAAAGTATAATCACGGTGGACCGTTGGCAAA	929	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.101	2.333	1.158	0.785	0.300	0.327
Raw	649.257	1114.980	472.657	514.751	69.080	81.561

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361199	4471	3e-21	1043 - 1099	98	57 / 58	plus	ABC02932 ABC05216 ABC05217 ABC05218 ABC14249 ABC47180
JLOC1	JLOC1_39991.2	1185	2e-21	1082 - 1138	98	57 / 58	plus
JLOC1	JLOC1_39991.1	807	2e-21	704 - 760	98	57 / 58	plus
Harvest21	ABC05218	992	6e-22	918 - 974	98	57 / 58	plus	ABC05218
Harvest35	U35_15770	1003	3e-25	930 - 989	100	60 / 60	plus

Contig Sequence (1003 bp)

>U35_15770 1003 Hv_44K_v2
ATCACTGCCCACTGCCTCCGCTCCCTTCCCTTCCCCCTCGAACCCATTAAACAACCGGAG
CCGTCCTCCTCCTCCTACCAGATCTCAGATCCGCGGAGCTCCCACGCGCCTCCCATGGCG
GTCAAGGTCTACGTCGTGTACTACTCCATGTATGGTCATGTTGCTAAGCTAGCTGATGAG
ATCAAGAAAGGTGCTTCCTCTGTTGAAGGCGTGGAGGTTAAAGTGTGGCAGGTCCCTGAG
ATCCTGAACGAGGAAGTCCTTGGCAAGATGGGCGCCCCTCCCAAGACCGACGTGCCGGTG
ATCTCCCCTCAGGAGCTGGCGGAGGCCGACGGCGTCCTGTTCGGGTTCCCGACGAGGTTC
GGCATGATGGCGGCGCAGATGAAGGCGTTCTTCGACGCGACGGGCGGGCTGTGGAGGGAG
CAGAGCCTGGCCGGCAAGCCGGCGGGCGTGTTCTTCAGCACGGGCACCCAGGGCGGCGGG
CAGGAGACGACGCCGCTGACAGCAGTGACCCAGCTGACCCACCACGGCATGGTGTTCGTG
CCGGTGGGGTACACGTTCGGCGCCAAGATGTTCGACATGGACAAGGTGCAGGGCGGCAGC
CCGTACGGGGCCGGCACGTTCGCCGGGGACGGGTCGAGGTGGCCGTCGGAGATGGAGCTG
GAGCACGCCTTCCACCAGGGCAAGTACTTCGCCGGCATCGCCAAGAAGCTGAAAGGCTCC
TCTGCCTGAGTGCATGATCCTCGCCTGATCACCGGTGGTGGTGCTGCTGCTGTTATCTGT
ATCTGTGGTCCTGTGGAGCCTTAGTTTGATGTGTGATGTGAACACTGTTATGTTGATTAT
CTTGGCTTTGATTGAACCGGTTGTAAAGCTTGTAAGTGGATTTTGCGTTTCATAGTGTTA
TATTTTGTCACCGCCATTGATATACAAGTAGTATGTAATCACGGTGGACCACTTATAAAA
AAGTATAATCACGGTGGACCGTTGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15770 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g42190.1	206	4e-126	protein\|NADPH-dependent FMN reductase domain containing protein, expressed
Brachypodium v1_2	Bradi2g20710.2	205	3e-132
Arabidopsis v10	AT4G27270.1	205	2e-104	Quinone reductase family protein \| chr4:13661458-13663243 REVERSE LENGTH=205