barSeed - Barley Seed Development Database

Probe CUST_10375_PI390587928

Source Contig U35_15779

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10375_PI390587928	Hv_44K_v2	GCAGTTCTGCAGGCTATAGTTTGCAACGCAACTGCTTGTCAGTTCAAATTTTTCAGTTAG	2302	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65119.16	3679	2e-24	2423 - 2482	100	60 / 60	plus	ABC06920 ABC22923 ABC26667
MLOC	MLOC_65119.15	1374	2e-24	1017 - 1076	100	60 / 60	plus	ABC06920 ABC26667
MLOC	MLOC_65119.24	1556	2e-24	35 - 94	100	60 / 60	plus	ABC06920 ABC26667
MLOC	MLOC_65119.8	2907	2e-24	1275 - 1334	100	60 / 60	plus	ABC06920 ABC26667
MLOC	MLOC_65119.9	2985	2e-24	1076 - 1135	100	60 / 60	plus	ABC06920 ABC26667
MLOC	MLOC_65119.25	1594	2e-24	20 - 79	100	60 / 60	plus	ABC06920 ABC26667
MLOC	MLOC_65119.20	2029	2e-24	809 - 868	100	60 / 60	plus	ABC06920 ABC26667
MLOC	MLOC_65119.14	2560	2e-24	1180 - 1239	100	60 / 60	plus	ABC06920 ABC26667
MLOC	MLOC_65119.13	1988	2e-24	1182 - 1241	100	60 / 60	plus	ABC06920 ABC26667
MLOC	MLOC_65119.22	2852	2e-24	867 - 926	100	60 / 60	plus	ABC06920 ABC26667
MLOC	MLOC_65119.10	4458	2e-24	2473 - 2532	100	60 / 60	plus	ABC06920 ABC22923 ABC26667
MLOC	MLOC_65119.12	4338	2e-24	2353 - 2412	100	60 / 60	plus	ABC06920 ABC22923 ABC26667
MLOC	MLOC_65119.2	3034	2e-24	1233 - 1292	100	60 / 60	plus	ABC06920 ABC26667
MLOC	MLOC_65119.23	2367	2e-24	419 - 478	100	60 / 60	plus	ABC06920 ABC26667
JLOC1	JLOC1_42828.7	2355	8e-25	1227 - 1286	100	60 / 60	minus
Harvest35	U35_15779	2569	3e-25	2303 - 2362	100	60 / 60	plus

Contig Sequence (2569 bp)

>U35_15779 2569 Hv_44K_v2
GATCGGGACGCTGACGGTGCGGGAGACGATCGGGTACTCGGCGCTGCTGCGGCTGCCGGA
CAAGATGCCCCGCGACGACAAGCGCGCGCTGGTGGAAGGCACCATCGTGGAGATGGGGCT
CCAGGACTGCGCCGACACCGTCATCGGCAACTGGCACCTCCGCGGCGTCAGCGGCGGCGA
GAAGCGCCGGGTCAGCATCGCCCTCGAGCTCCTCATGCGGCCCCGCCTCCTCTTCCTCGA
CGAGCCCACCAGCGGCCTCGACAGCTCGTCGGCCTTCTTCGTGACGCAGACGCTGCGGGG
GCTGGCGAGGGACGGCAGGACGGTGATTGCGTCCATCCACCAGCCCAGCAGCGAGGTCTT
CGAGCTCTTCGACATGCTCTTCCTGCTCTCCGGGGGCAAGAACGTCTACTTCGGACAGGC
AGCGCAAGCATGCGAGTTCTTCGCTGAAGTTGGCTTCCCGTGCCCGCCTATGAGGAACCC
CTCGGACCATTTCCTGAGGTGCGTCAACTCCGACTTCGACAAGGTTAAGGCCACCCTCAA
AGGATCGATGAAAGCAAGGATCGAAAGGTCCGATGATCCTCTAGATAAGATAACCACGTC
GGAGGCCATCAGGAAACTGGTCTCTGCCTACAACAGGTCACAGTACTACTACGCTGCTAG
GGAGAAAGTTAATGACATTGCGCGAATCAAAGGAACGGTGATGGATTCAAGGGGCAGCCA
GGCTAGCTTCTTGATGCAGGCATGTACACTTACCAGACGCTCATTCATCAACATGTCGCG
CGACTTTGGGTACTACTGGCTCAGGCTCTTGATCTATCTCCTTGTCACCGTCTGCATCGG
CACAATCTACCTGGATGTTGGCACCAAATACACATCCATCCTGGCCAGGGCAGCATGTGC
AGCATTCGTCTTTGGATTCGTCACCTTCATGTCCATTGGAGGATTCCCTTCATTCGTGGA
AGAAATGAAGGTCTTCCAGCGGGAGCGGCTGAATGGGCACTACGGTGTTGCAGCATTTGT
CATTGCCAACACCATCTCGGCTCTGCCATTCCTGGTCCTGATATGCTTCCTGTCAGGGAC
AGTATGCTACTTCATGGTGCGCCTTCATCCTGGTTTCTCACACTACATCTTCTTCGTCTT
GAACCTCTACGCCAGTGTCACCGTGGTTGAGAGCTTGATGATGGCCATTGCAAGTGTCAT
ACCCAATTTCCTCATGGGCATCATCATAGGAGCTGGAATTCAGGGAATATTCATGCTTGT
CTCTGGATACTTCAGACTTCCGTATGACATCCCCAAGGTTTTCTGGAGATATCCCATGCA
GTACATCAGCTTCCATTACTGGGCACTACAGGGCCAATGCCAGAATGACATGGACGGTCT
CCTATTCGACAACCAATACCCGGACCAGCCGAAGATCCCCGGGCAGTTCATACTGAAGTA
CATCTTCCAGATCAACGTGCACCGGTCAAAGTGGATCGACCTGTCGGTCATCTTCAGCAT
GATCTTCATCTACCGCATGCTCTTCTTCATCATGATCAAGGTGAACGAGGACGTGATGCC
CTGGATCCGGGGCTACATCGCGAGGAAAAGGCTTCAGAAGAAGGTGCCTGCCATCGGCAA
GACGCCTTCCCTGAGAGGCTACGTCGTGGATCCGGAGCTCGGTCCTAATGAAGGCTAGAA
AGAAGATGATAAGCTTGGGGGTCGCTGGGGTAGCACAAATAGGAGGTCTCCTACCGGTTC
TTGCCGTAATATGTATCTATGATCAGAGAAACTGGTAATTTTTATACGTTTTGCAAGGTG
AAAGCCCGTTTCAGTAGAGGTACATACATACATGTAATGCGTTCGTTGAGAAATGGCATC
GGCGATGCAGGGTGACACATAATTGGACGTTCACGGTTTGTTGCTGTCTTGGAAGGGCAG
CAGGATAGGTAGACATGGTTGGGGGCAGTAAAGGCCGGGAAAGCAGTACACACATGGCTT
CGCTGTATGAGCACAGCGATCCTGCTCGCTTGCAGATTACTACTCGTACTTACTGAGACG
ACAGTACTATTCAAGCTACAATAAATATTCATAATTGCGGTTAGATAGATTGACAGGTTT
ACAAAACATTCCACATGGTTTGACAGCTTCTCTAAACATTCCACATGGGGTCATTCAAGT
TGTGTTTGTAAATATCTGGCCTTCTTTTCAAAACTATTCACTCTGTTTTTAAATATTTGT
CTTTTTAAAGATTCAACTATGGACTACATATGAAGTAAAATGAGTAAATCTATATAGCGG
CCGCTGCCAGTTAATTCAGATTGCAGTTCTGCAGGCTATAGTTTGCAACGCAACTGCTTG
TCAGTTCAAATTTTTCAGTTAGAAATTAAGGTTACCTGTGACACACAAGATAATCCCACT
AAGTGACACCCATCCACTCTTCCCGTTCCTTATGAAGTATTGCACTATATACATCGGATT
GAAGGCCCGCAGAACACCGATGTCTTGAACAACGAGGTTGTACATCCCGATGCCGGCAAT
TAGAAGGAACCACATTGAGATGACTGGCGCAAAGGTGTATCCGACCTTG

Homology of Contig U35_15779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g44610.1	712	protein\|white-brown complex homolog protein 11, putative, expressed
Brachypodium v1_2	Bradi5g16400.1	716
Arabidopsis v10	AT1G17840.1	703	\| Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 \| white-brown complex homolog protein 11 \| chr1:6142870-6145894 FORWARD LENGTH=703