barSeed - Barley Seed Development Database

Probe CUST_10324_PI390587928

Source Contig U35_16491

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10324_PI390587928	Hv_44K_v2	GATCTTTGTGTAACAAAAACAATCCTCTCCTTGTCAGTACATGTTCTCTTTCTCTCTTAA	1459	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.039	0.981	1.547	1.348	0.361	0.416
Raw	362.083	554.137	740.187	1024.917	96.541	118.737

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54762.1	3195	2e-23	165 - 222	100	58 / 58	minus	ABC06783 ABC13494 ABC49746
JLOC1	JLOC1_35266.4	3770	1e-23	2978 - 3035	100	58 / 58	plus
JLOC1	JLOC1_35266.3	3770	1e-23	2978 - 3035	100	58 / 58	plus
JLOC1	JLOC1_35266.2	3622	1e-23	2830 - 2887	100	58 / 58	plus
JLOC1	JLOC1_35266.1	3499	1e-23	2707 - 2764	100	58 / 58	plus
Harvest21	ABC06783	1469	4e-24	1374 - 1431	100	58 / 58	plus	ABC06783
Harvest35	U35_16491	1534	3e-25	1460 - 1519	100	60 / 60	plus

Contig Sequence (1534 bp)

>U35_16491 1534 Hv_44K_v2
GTAATTGGTGGCGTCTTCGGAGGCCTTTTCAACTTTCTCTTGGATAGGATTCTTCGTGTC
TACAGTATTATCAATGAGAGAGGTGCCCCATCCAAGATCCTTCTCACCATCACAATATCG
ATCATCACTTCGGCGTGCTCCTATGGGCTCCCTTGGCTTGCTGCATGCTCTCCGTGCCCT
GTTGGTTCAATGGAGGAATGCCCCACCATTGGCCGCTCTGGAAATTTCAAGAGCTTCCAG
TGCCCGCCTGGTCATTACAATGGTCTGGCATCACTCTTCTTCAACACAAATGACGATGCC
ATCCGCAATCTCTTCAGCCGTGGTACCGAAAATGAGTTCCACATGTCTAGCCTTTTCGTG
TTCTTCATCGCTATCTACTGCCTTGGTCTCGTGACATATGGCATTGCTGTCCCATCTGGT
CTCTTTATCCCGGTAATACTTGCCGGCGCTACATATGGACGCATTGTGGGGACACTTCTT
GGTCCCATGTCTGATATCGACCCTGGCCTCTTTGCACTGCTGGGTGCCGCATCTTTCCTT
GGTGGAACAATGAGAATGACGGTGTCAGTCTGCGTGATCCTTCTGGAGCTCACAAATGAG
CTCCATATGCTCCCTTTGGTCATGCTCGTCCTCCTGATATCAAAGACCATAGCCGATTGC
TTCAACAAAGGGGTGTATGATCAGATTGTGGTGATGAAAGGCTTGCCATTCATGGAGGCT
CATGCTGAACCGTACATGAGGCACTTGGTAGCTAGTGATGTTGTGTCTGGGCCACTCATC
TCCTTTTCGGGTGTTGAGAAGGTGGGCAACATTGTTCATGCGTTAAGGATCACGGGCCAC
AACGGGTTTCCAGTGGTCGATGAGCCGCCTGTATCAGAAGCTCCGGAGCTGGTTGGGCTC
GTGCTTAGATCACATCTGTTGGTTCTTCTGAATGGAAGGAACTTCATGAAGGAGAAGGTG
AAAACAAGTGGTAGCTTTGTGCTAAGAAGGTTTGGTGCATTTGACTTTGCAAAGCCTGGT
TCCGGGAAAGGTATGAAAATCGAGGACCTAGATTTCACTGAGGAAGAAATGGAGATGTAC
GTCGATCTCCATCCAATCACAAACACTTCGCCGTACACGGTGGTCGAAACAATGTCGCTT
GCAAAGGCCGCAGTCCTGTTCAGGGCACTAGGGCTAAGACACCTGCTGGTTGTGCCAAAG
ACCCCAGGGAGATTTCCTATCGTTGGGATTCTCACCAGGCACGATCTCATGCCGGAGCAT
ATCCATGGGCTGTTCCCCAATCTCCGCAAGTCACACTGAGAAGCAAAATCAGCAGACCAT
GCACAATTTTCTTGTACGTGTTGTTATTTCTCATGAAAGGTGCTGCTTCATTGGATCATG
GAATAATCAATCTGATATGTCTATTGTAAAGAGTTGATTCCCTATCAGCAGTTGAGTGGG
TTTCATTTTGGCAGCTTGTGATCTTTGTGTAACAAAAACAATCCTCTCCTTGTCAGTACA
TGTTCTCTTTCTCTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16491 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35190.1	805	0.0	protein\|chloride channel protein, putative, expressed
Brachypodium v1_2	Bradi5g11340.1	796	0.0
Arabidopsis v10	AT5G49890.1	779	1e-178	\| Symbols: CLC-C, ATCLC-C \| chloride channel C \| chr5:20288489-20292143 REVERSE LENGTH=779