barSeed - Barley Seed Development Database

Probe CUST_1024_PI390587928

Source Contig U35_40188

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1024_PI390587928	Hv_44K_v2	TGTTCCACATGTATCACTATTAGTAAAAATATTCCTAACTTTTGCAGCTGCCTTTGGAGC	447	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_834.3	492	2e-24	327 - 386	100	60 / 60	minus	ABC08175
MLOC	MLOC_834.2	964	2e-24	799 - 858	100	60 / 60	minus	ABC08175
JLOC1	JLOC1_514.1	1452	8e-25	524 - 583	100	60 / 60	plus
Harvest21	ABC36520	583	3e-25	448 - 507	100	60 / 60	plus
Harvest35	U35_40188	583	3e-25	448 - 507	100	60 / 60	plus

Contig Sequence (583 bp)

>U35_40188 583 Hv_44K_v2
GGGCTGGGCCTGCACCAGCCTAAGCTATGGCATATTGTAATTACAGAAGTTGTGTTAGAT
TAGGAGTCTGGGCAAGTTGGAAAGGTTTAGTCCCGTAGAAGGTTACCTGCCAACTCCCAA
TTAGAGTAGGAGTCTAGTCTTGTAATCAGGCTTTATATAGCCAGCTTTGGGTATCAATAA
AGTTAAGCAGAAAACAATCTAATCTCTCACCCCTTGCTCCTGCGCCTCGGCGCCTCTCCT
CATCCCCTTCTCCAGCGATAGGTCGGCGAGGGACTCGCCCTCGGCCACCTGTCTCCCATG
ACTACAACCTCCGTTCCAACCCACCAGCCCGTGACAAGGATACTTTTAATTAGGTTACCC
GTATTTTTTGATATATTATTAGACCTTGTTTTCTGTGTAAATTAGTGGTGGTAGTATGGT
ACTTTATCATTTGGCAAGGATTTCTTTTGTTCCACATGTATCACTATTAGTAAAAATATT
CCTAACTTTTGCAGCTGCCTTTGGAGCCGTCCTTCATGTTGTATCGACCGCTCTTCTAGG
GATAACTGCAGTTACTATGGCAAATACTATAGCGGGCGAGGAA

Homology of Contig U35_40188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None