barSeed - Barley Seed Development Database

Probe CUST_10167_PI390587928

Source Contig U35_21066

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10167_PI390587928	Hv_44K_v2	TGCCCCATTGACAATTATTATTGTCTGTTCTCCACTGGAATTGGTCTGGTGTTCATCAAA	904	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.421	1.548	1.183	0.721	0.313	0.326
Raw	11230.097	18891.453	12750.737	12016.380	1862.440	2107.847

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11952.2	2581	2e-23	19 - 76	100	58 / 58	minus	ABC15470 ABC48549
MLOC	MLOC_11952.1	2570	2e-23	36 - 93	100	58 / 58	minus	ABC15470 ABC48549
JLOC1	JLOC1_7976.1	2615	1e-23	2482 - 2539	100	58 / 58	plus
Harvest21	ABC48549	319	1e-23	15 - 74	98	59 / 60	minus	ABC48549
Harvest35	U35_21066	978	3e-25	905 - 964	100	60 / 60	plus

Contig Sequence (978 bp)

>U35_21066 978 Hv_44K_v2
ATGAGGTGATTGAATATCGTGGTCAACCCAAGACTGAATTCCAGCGGTATATACGACTTA
GTCGTAAAGATATGTTGGACTATTCATTTGGTGATGACACTTGTCCTGAAGAAGGCAAGC
TCTTGGACCACCAGCCTTTAAGGCTAAACCAGGATGATTATGACCGAGTCCAGCAGATTC
CGATAAAGAAGGGAGCAAATTTCCGTGACTTGCCAGGCGTCAAGGTTGGAGCGAATAACA
TTGTGGAGTGGGATCCAGAAGTTGAGCGTGTCTACCTCAAGTCTGGCAAACCTTTGGTCC
CTGACTATGCAATGTCCTTCATCAAGGGCAGATCACCAAAGCCGTTTGGTCGGTTGTGGT
GGGATGAGACGGTGCCTACGGTTGTGACCAGAGCAGAGCCGCATAACCAGATCATTCTGC
ACCCGAACCAGGGACGTGTTTTGACTGTCCGCGAGAACGCTAGGCTGCAAGGGTTCCCCG
ACTACTACCGGATGAACGGTCCCATGAAGGAGAAGTACATCCAAGTCGGAAACGCTGTGG
CTGTCCCCGTCGCACGTGCACTGGGCTACTCTCTGGGCCGGGCGTACCAGGGCGAGGTGG
ATGCGGGGCATGATGCGCTGTTTGTCCTTCCCGAGAGCTTCACCAACGTCGGGCAGACCG
GAGCACGGGCAAGGGCTTCCTCCGTTGGGACCCCTGCCGGCGAGGTGGTCGAGCAGTAGA
GCGGAGGCTGTCTGTTGTGTTGTGGTGGCGGTGTTCGAGTCTAGTCCATTTGTCGCGGGA
ACTAAATTGCTGCAGCATGTAAGGATTGCTCGAGTGGTTGGCTGGTTGAACTTGTTGTGA
TCGTTGAGATCCTTAGTCGTAGATGAAGAAACTGGTACTGGTATGTTGTTCCATTGTTGC
TACCTGCCCCATTGACAATTATTATTGTCTGTTCTCCACTGGAATTGGTCTGGTGTTCAT
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_21066 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g01570.1	372	1e-133	protein\|C-5 cytosine-specific DNA methylase, putative, expressed
Brachypodium v1_2	Bradi3g21450.2	895	1e-148
Arabidopsis v10	AT1G69770.1	839	1e-77	\| Symbols: CMT3 \| chromomethylase 3 \| chr1:26248496-26253519 REVERSE LENGTH=839