barSeed - Barley Seed Development Database

Probe CUST_10135_PI390587928

Source Contig U35_21080

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10135_PI390587928	Hv_44K_v2	CCAGAACATGTTACAAAATTGTCGCAGAAAATATGCCTGAAACAGTGGGATTGAATAACA	625	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52652.7	3846	2e-24	3109 - 3168	100	60 / 60	plus	ABC12765 ABC15390
MLOC	MLOC_52653.1	4484	2e-24	3109 - 3168	100	60 / 60	plus	ABC12765 ABC15390
MLOC	MLOC_52652.1	3340	2e-24	2242 - 2301	100	60 / 60	plus	ABC12765 ABC15390
MLOC	MLOC_52652.2	3337	2e-24	2239 - 2298	100	60 / 60	plus	ABC12765 ABC15390
JLOC1	JLOC1_33756.1	4384	8e-25	1468 - 1527	100	60 / 60	minus
JLOC1	JLOC1_33755.4	5098	8e-25	2228 - 2287	100	60 / 60	plus
JLOC1	JLOC1_33755.3	5101	8e-25	2231 - 2290	100	60 / 60	plus
JLOC1	JLOC1_33755.2	5106	8e-25	2236 - 2295	100	60 / 60	plus
JLOC1	JLOC1_33755.1	4919	8e-25	2049 - 2108	100	60 / 60	plus
Harvest21	ABC15390	716	3e-25	32 - 91	100	60 / 60	minus	ABC15390
Harvest35	U35_21080	716	3e-25	626 - 685	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_21080 716 Hv_44K_v2
ATCAAATAACCACAACCACAATGAGGAAGAGCAGTACATCACCCTTGTCCGTACATCACC
AGACTATCCTGATGGCAGAGCAACCGCGCTCCTAAACTGGAAACTACTCGCAATTGAGTT
TCTACCCAAAGAGGATGCAGTCTTTGTGCTCCTCTTATGCACGGCGATCGCACGAACAAT
GACAGAGATCAGAAGGGAAGATGTGTCCGGGCTTCTGGTGCGGCGAAGAATGCGCGAACC
ACAGGTAGGGCAGAGAGACTGGGGCTCGGTGATGCTGCCGGACGCGCCTTCCCTTGACCC
TCATTTGCAGCCGTGGTACCGGAATGCGGCGCGTGTTTTGAGCTCCGCGGAGACTGTGCT
GCCTAACAGAGCGATGCCCGTTAAATACTCGCCTACCGATGGCAAGGATGAGCTGTACAG
GCAAGCTCTTATACCCTGAAGCCCTGATGGGGATACTTTTTGTGAAGCAATGTACATTAG
CCACAGATCTTTTTTTATTGTGGCTGTACACGTCATCTGAAAATGGCTTGATTTGTTGTT
GTGTATGGTTTGTTTGTCGATAGATAAAGATCTTGTATTGCTTTGAGTATATTGTATGTA
ATTCAGAATAATACGGGAGGATATCCCAGAACATGTTACAAAATTGTCGCAGAAAATATG
CCTGAAACAGTGGGATTGAATAACATCTTCACATCAGCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g12637.1	742	2e-74
Arabidopsis v10	None