barSeed - Barley Seed Development Database

Probe CUST_10089_PI390587928

Source Contig U35_36632

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10089_PI390587928	Hv_44K_v2	CCATTTTTACCCCATGGAAATAGCTGGGCATATTGCTGCGGCATATACCTTCCAGTGAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77319.1	2966	6e-24	1660 - 1718	100	59 / 59	minus	ABC02466 ABC31772
MLOC	MLOC_77319.4	2312	6e-24	1045 - 1103	100	59 / 59	minus	ABC02466 ABC31772
JLOC1	JLOC1_51565.2	1428	3e-24	1167 - 1225	100	59 / 59	plus
Harvest21	ABC31772	693	3e-25	15 - 74	100	60 / 60	minus	ABC31772
Harvest35	U35_36632	693	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (693 bp)

>U35_36632 693 Hv_44K_v2
TTTTTTTTTTTTTTTTTCACTGGAAGGTATATGCCGCAGCAATATGCCCAGCTATTTCCA
TGGGGTAAAAATGGACACAAAAATTCCACAATTCAAAAGTTCACAACAAGAAAAGAAAAG
GCATAATGTGAGGAAAGCAAAGCCTCCAAACGAGAAGCAAGCGGTTCAAGCGTAAACATG
GCACAGCCTAAAATCACCTCACTGGAAGGCCTTTTCTGGGTGAATTCCGTCTATTTTGGA
ATGATGAGGGAAGTCATGGGGCATATCTTCAGGTTTCAGACCAGCGCCTCTTAAGGTTTG
GACAACCTCCTTGTGGACCAGAGCATTTCCTTCCGGTGTCAGATGCAGTCCATCACTTAA
GTAAAGTTTCTGCCAACCTTCAGTCGCTTGCATCTTTGACCAAAGATCAACATACTGTAC
ATCCATTTCTTTGGCTAGTTCTATACATTGACCTGCATAGACACCAGCCATTTCATTTGT
CCTTTCAGGGAGCCTCCTCGCATCTTTTCCATAGAGTGATCGTGCATATCTTTCTCTTCC
ATCTTCGTCAATAGGAGGTGGGGTGATAAGCAAAATCACCATGGACTTGGAACAATCCTT
CAGGTGATTAACAATTGTTTTGAGATTCTGTTTATACTCCTCAACTGGAACATGTTGTCG
CTCGCTTGTTCGTCCTAGAAGCGCTGCATCATT

Homology of Contig U35_36632 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g33690.1	271	3e-97	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g13430.1	266	1e-101
Arabidopsis v10	AT5G62930.1	242	1e-72	SGNH hydrolase-type esterase superfamily protein \| chr5:25254912-25256357 FORWARD LENGTH=242