barSeed - Barley Seed Development Database

Probe CUST_10076_PI390587928

Source Contig U35_12682

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10076_PI390587928	Hv_44K_v2	CATGGACAATGTAGCTAAATTTGTTAAAGGGAAGAGTGTGACAATAATTGGGTCTGGAAA	585	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11896.2	1965	7e-23	620 - 679	98	59 / 60	plus	ABC13704 ABC21141 ABC26541 ABC50975
JLOC1	JLOC1_7933.4	2506	4e-23	606 - 665	98	59 / 60	plus
JLOC1	JLOC1_7933.1	1959	4e-23	659 - 718	98	59 / 60	plus
Harvest21	ABC24528	645	3e-25	586 - 645	100	60 / 60	plus
Harvest35	U35_12682	645	3e-25	586 - 645	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_12682 645 Hv_44K_v2
GGTAAAAATGGACAGGAAGAGGGTAGGCATTGTTGGTGCTGGTGTGAGCGGCCTAGCAGC
CTGCAAGCACGCGCTAGACAAGGGATTCAGCCCGGTAGTATTCGAGGCCGATGACACCAT
TGGTGGAGTGTGGGCGCATACCTTGGAGTCAACGAGGCTTCAGGCGCCTACGACATCGTT
CCGGTTCTCAGACCTGGCATGGCCTGCAAGCGTGACAGCGACGTACCCAGGCCACCGGGA
AGTCATGGAGTACATCAGGTCGTACGTGTGCGAGTTTGACCTCCTTAAGTGTATCAAGTT
CAATAGTCAGGTGTTGGGAGTTGAATACCTTGGTGCGACCGAGGAAGAGATCATGGAGTG
GGAGCATTGGTCTGGCAATGGGACGGCATTCGGAGCTGGCAAGGATGGAGAGTGGAGCAT
CACAGTGAAGGACCTGAAGATTGGTAATGTTGAGGTTTTTCAAGTGGATTTTCTCATACT
GTGCATCGGAAGGCATAGTGGGACCCCAAATATCCCAGAATTTCCAGCTAATAAAGGGCC
CGAGTTGTTCAAGGGAAAAATATTGCACTCTATAGACTACTCTTACATGGACAATGTAGC
TAAATTTGTTAAAGGGAAGAGTGTGACAATAATTGGGTCTGGAAA

Homology of Contig U35_12682 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37620.1	520	2e-132	protein\|flavin-containing monooxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi4g37110.1	520	5e-137
Arabidopsis v10	None